Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05580 542 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 542 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT2G29980 540 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G12120 223 / 4e-69 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 109 / 3e-26 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036184 [exp] 754 / 0 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10040660 [exp] 649 / 0 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10018245 [exp] 645 / 0 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10027809 [exp] 537 / 0 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10005039 [exp] 484 / 1e-171 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10021050 [exp] 233 / 2e-73 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 233 / 2e-73 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 229 / 6e-72 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 223 / 3e-69 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252900 [exp] 602 / 0 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 568 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 563 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 560 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 556 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G046200 [exp] 234 / 2e-73 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 232 / 3e-72 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 228 / 4e-71 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 224 / 9e-70 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 160 / 6e-46 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10038321 pacid=23158190 polypeptide=Lus10038321 locus=Lus10038321.g ID=Lus10038321.BGIv1.0 annot-version=v1.0 ATGAGCCCTCCAAACTCAATGAGTCCCGCCACCAACGGCAGCACCAATGGTGTGGCTATCAATGGGGCGAAGAAGCTACTCGATTTCGACCCGAGTGCTG CTCCCCCTTTCAAGATTGCAGACATCCGTGCTGCAATCCCGCCGCATTGTTGGGTGAAGAACCCCTGGAGGTCACTCAGCTACGTCCTGAGAGACCTCCT GGTCATCCTCAGCTTCGCCGTTGCGGCGACAAAGCTGGACAGCTGGACTGTCTGGCCTCTCTACTGGATTGCTCAAGGAACCATGTTCTGGGCAGTCTTT GTTCTTGGACATGATTGTGGCCATGGGAGCTTCTCAGACAGTTGGTTGTTGAACAACGTGATGGGACATATACTCCATTCCTCAATCCTCGTACCTTACC ATGGATGGAGAATTAGCCACAAGACCCATCACCAGAATCACGGCAATGTGGAGAAAGATGAATCCTGGGTTCCACTGCCGGAGAAGGTGTACAAGAGCTT GGATACCGGCACCAAGTTCATGAGGTTCACCATCCCTCTCCCAATGTTTGCGTATCCTATCTACTTGTGGAGGAGAAGTCCGGGGAAGAAAGGGTCGCAT TTCAACCCATACAGTGACCTGTTCGCACCGAACGAGAGGACATCGGTCATGATTTCGACATTGTGCTGGACAGCCATGGCCTTACTCCTCTGCTACTCAT CGTTCATCTACGGCTTCCTTCCGGTCTTCAAAATCTACGGCGTCCCTTATCTAATATTCGTGGCGTGGCTCGACATGGTGACCTACCTTCACCACCACGG GTACGAGCAGAAGCTGCCGTGGTACAGAGGCAAAGAGTGGAGCTACCTACGTGGAGGGCTGACGACCGTCGATCGAGATTACGGGGTCATCAACAACATC CACCATGACATTGGCACCCATGTTATTCACCATCTCTTCCCTCAAATGCCACACTATCACCTAGTCGAAGCGACTCAGGCAGCGAAGCACGTGCTGGGGA AGTACTACAGAGAACCGAAGAAATCAGGGCCTTTCCCATTCCACTTGTTTGGGTACTTGGTGAGGAGCCTGGGCGAGGATCACTACGTTAGCGATACAGG CGACGTCGTTTTCTATCAATCTGACCCACATATTCCCAAGTTCCCTACCAGTGCCACCACCAAGTCCAAATCTAGCTGA
AA sequence Show only first row Show all	>Lus10038321 pacid=23158190 polypeptide=Lus10038321 locus=Lus10038321.g ID=Lus10038321.BGIv1.0 annot-version=v1.0 MSPPNSMSPATNGSTNGVAINGAKKLLDFDPSAAPPFKIADIRAAIPPHCWVKNPWRSLSYVLRDLLVILSFAVAATKLDSWTVWPLYWIAQGTMFWAVF VLGHDCGHGSFSDSWLLNNVMGHILHSSILVPYHGWRISHKTHHQNHGNVEKDESWVPLPEKVYKSLDTGTKFMRFTIPLPMFAYPIYLWRRSPGKKGSH FNPYSDLFAPNERTSVMISTLCWTAMALLLCYSSFIYGFLPVFKIYGVPYLIFVAWLDMVTYLHHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGVINNI HHDIGTHVIHHLFPQMPHYHLVEATQAAKHVLGKYYREPKKSGPFPFHLFGYLVRSLGEDHYVSDTGDVVFYQSDPHIPKFPTSATTKSKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	0	1
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	1.0	0.8438
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	12.6	0.7787
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10011649 [exp]	19.0	0.6738
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	23.5	0.7467
					Lus10037765 [exp]	23.9	0.7538
					Lus10012088 [exp]	26.0	0.7187
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	29.4	0.7818
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	30.5	0.7682
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	38.2	0.7570
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038246 [exp]	40.4	0.6690

Compare expression of checked genes

Lus10038321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.