Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29990 744 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 741 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT4G28220 238 / 9e-72 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 224 / 4e-66 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 218 / 5e-64 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 202 / 3e-58 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 105 / 4e-24 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G24170 44 / 0.0002 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G09940 44 / 0.0002 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036185 [exp] 963 / 0 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 822 / 0 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 695 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 687 / 0 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 375 / 2e-128 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018249 [exp] 300 / 4e-99 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10018541 [exp] 232 / 3e-69 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 228 / 7e-68 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 212 / 2e-61 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047100 [exp] 761 / 0 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.004G036300 [exp] 700 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 698 / 0 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.013G147300 [exp] 224 / 2e-66 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 216 / 4e-63 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 212 / 1e-61 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147400 [exp] 208 / 2e-60 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G042500 [exp] 203 / 1e-58 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.007G098700 [exp] 94 / 2e-20 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 49 / 3e-06 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10038322 pacid=23158373 polypeptide=Lus10038322 locus=Lus10038322.g ID=Lus10038322.BGIv1.0 annot-version=v1.0 ATGGCCTGGTTTCGGACCTTGACCCGATTATCAACCACCGTCAAATCCTTCCCGCCTCCGCCCATCAGAACCACACCTGTCGCCACCTCGCTCTCCTACT TCACCACCGTCGTCGCCGACAACGCCCCTCCTCCTCATCCGACTCTGTCTCCGTCGCCGACTCACTGCGGAAGCTTGAAGCCCACGACAAACGGCGAGAA GGCAAGGGTGGTGGTTTTGGGATCCGGATGGGCAGGCTGCCGCTTGATGAAAGGAATCGACACCACCTTATACGACGTTGTCTGCGTTTCCCCGAGGAAC CACATGGTCTTCACCCCTCTCCTTGCTTCCACCTGCGTCGGAACTCTCGAATTCAGGTCTGTTGCTGAGCCCGTGGGTCGGATCCAGCCCGCCATTTCTT CCGAACCCGGATCGTACTTCTTCCTCTCTAATTGCAAAGGGATCGACCCTCACAACCATTTGGTGAAGTGTGAGACGGTGACTGATGGACCAAACGCAGT GGAGCCATGGAAATTCACCATAGCATATGATAAATTGGTGATCGCATCAGGAGCGGAGGCCACCACTTTTGGAATCCAGGGAGTGAAGGAGCATGCCATT TTCCTCAGAGAAGTTCATCAGGCTCAGGAGATTCGGAGGAAGCTGCTCCTGAATTTGATGCTCTCAGATGTCCCAGGCACTACAGAGCAGGAAAAGAGCA GATTGCTGCATTGTGTTGTTGTTGGAGGTGGCCCAACTGGAGTTGAATTCAGCGGAGAGCTTAGTGATTTCATCATGAAAGATGTTCGTCAAAGGCATGC TCATGTCAAGGATTACATCCGTGTTACTTTGATCGAGGCAAATGAGATATTGTCTTCCTTCGATGATCGTCTGCGGCAGTATGCTACAAAACAATTGACC AAGTCAGGAGTTCGACTTGTCCGTGGCATTGTCAAGGATGTCGAGGCTGACAAGATAGTTCTTGATAATGGAACAGAGGTTCCTTATGGTTTACTGGTTT GGTCTACTGGCGTTGGCCCTTCGCCTCTTGTTAAATCTCTGGACTTGCCCAAATCTCCTGGTGGAAGAATAGGGATTGATGAGTGGCTAAGGGTACCCAA TGTGCCGGATGTATTTGCAATTGGAGACTGCAGTGGGTTTGTCGAGAGCACTGGTAAACCAGTCCTGCCTGCTTTAGCTCAGGTTGCAGAGAGGCAAGGT AAGTACCTCGCAAGTCTACTAAATCGAATCGGTAAAGCTGGTGGAGGGCGGGCAAACAGCGGAGCAGACGTAGATTTCGGAACTCCATTTGTCTACAAAC ATCTAGGAAGTATGGCGACCCTAGGGCGGTACAAGGCTCTTGTGGATCTCCGACAGAGCAAAGAAGGTAAAGGGATATCATTAGCTGGTTTCGTCAGCTG GTTCATATGGCGGTCAGCATACCTTACCCGAGTGATAAGCTGGAGGAACAGGTTTTACGTTGCTGTTAACTGGATGACAACAATGGTGTTTGGTCGTGAT ATAAGCAGAATCTAG
AA sequence Show only first row Show all	>Lus10038322 pacid=23158373 polypeptide=Lus10038322 locus=Lus10038322.g ID=Lus10038322.BGIv1.0 annot-version=v1.0 MAWFRTLTRLSTTVKSFPPPPIRTTPVATSLSYFTTVVADNAPPPHPTLSPSPTHCGSLKPTTNGEKARVVVLGSGWAGCRLMKGIDTTLYDVVCVSPRN HMVFTPLLASTCVGTLEFRSVAEPVGRIQPAISSEPGSYFFLSNCKGIDPHNHLVKCETVTDGPNAVEPWKFTIAYDKLVIASGAEATTFGIQGVKEHAI FLREVHQAQEIRRKLLLNLMLSDVPGTTEQEKSRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRHAHVKDYIRVTLIEANEILSSFDDRLRQYATKQLT KSGVRLVRGIVKDVEADKIVLDNGTEVPYGLLVWSTGVGPSPLVKSLDLPKSPGGRIGIDEWLRVPNVPDVFAIGDCSGFVESTGKPVLPALAQVAERQG KYLASLLNRIGKAGGGRANSGADVDFGTPFVYKHLGSMATLGRYKALVDLRQSKEGKGISLAGFVSWFIWRSAYLTRVISWRNRFYVAVNWMTTMVFGRD ISRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10038322 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	2.6	0.8553
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	19.2	0.8248
AT5G25265			unknown protein		Lus10005347 [exp]	22.3	0.8230
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	22.4	0.8131
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	23.5	0.8160
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	23.9	0.7985
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	26.2	0.8228
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	29.5	0.8096
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	35.0	0.7720
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	35.5	0.7939

Compare expression of checked genes

Lus10038322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.