Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53240 530 / 0 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 526 / 0 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT2G22780 401 / 4e-140 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 378 / 2e-131 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G47520 365 / 2e-125 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 64 / 1e-12 malate dehydrogenase-related (.1) AT4G17260 54 / 4e-08 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017939 [exp] 573 / 0 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10013680 [exp] 524 / 0 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 397 / 2e-138 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 379 / 4e-131 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10034458 [exp] 377 / 1e-129 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10011587 [exp] 379 / 5e-129 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10019096 [exp] 375 / 8e-129 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10036186 [exp] 363 / 2e-127 AT1G53240 331 / 4e-115 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10021666 [exp] 365 / 2e-125 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096300 [exp] 544 / 0 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 540 / 0 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 514 / 0 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 403 / 6e-141 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 399 / 2e-139 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 398 / 7e-139 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G102000 [exp] 378 / 4e-130 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 376 / 2e-129 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 375 / 7e-129 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 293 / 9e-99 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038323 pacid=23158435 polypeptide=Lus10038323 locus=Lus10038323.g ID=Lus10038323.BGIv1.0 annot-version=v1.0 ATGAATTCAGTGCTGAAATCCGCGAAAGCCCTTACCGGAACAGCCTCCCGATCTTCTCTACTCCGCCGTGGTTACTCCTCCGATTCCGTTCCGGACCGGA AGGTCACCATCCTCGGCGCGGCTGGAGGGATTGGTCAGCCACTCTCACTTCTTATGAAGCTCAACCCTCTCCTCTCCAACCTTGCCCTCTACGATATCGC CAATACCCCCGGAGTAGCCGCCGATGTCAGCCACATCAATACCGGATCTGAGGTTTCTGGGTACGTTGGCGATGAACAACTGGGAAAAGCTTTGGAGGGA TCAGATATCGTAATCATACCAGCTGGAGTTCCAAGGAAGCCTGGAATGACCCGTGATGATCTCTTCAATATTAATGCTGGAATTGTTAAAGGTCTTTGTC AAGCAATTGCCAAGTACTGCCCTCATGCGCTCGTGAATATGATTAGCAATCCAGTGAACTCAACTGTTCCAATAGCGGCTGAGGTCTTCAAGAAAGCTGG AACTTATGATGAGAAAAGGTTATTTGGAGTTACTTCTCTTGATGTGGTCAGGGCTAGGACTTTCTATGCTGGGAAGGCCAACGTCCCTGTCGCAGGGGTC AACATTCCAGTTGTAGGTGGGCATGCCGGCGTGACAATTCTCCCATTGTTTTCACAAGCCAATCCCAAAGCCAACTTGTCAGATGAAGAGATAGTTGCTT TGACGAAGAGAACTCAAGACGGTGGCACGGAAGTTGTGGAAGCAAAGGCTGGAAAGGGCTCTGCAACATTGTCAATGGCCTACGCCGGTGCCCTTTTTGC TGATGCATGCTTGAAGGGGCTCAATGGTGTTCCAGATGTGGTCGAATGCACATTTGTACAGTCGAATGTGACCGAACTTCCTTTCTTTGCTTCAAAGGTG AGACTTGGAAAGAATGGCGTCGAGGAAATCTTGGGATTGGGTCCTCTTTCAGACTTTGAGAAACAAGGGTTGGAAAACATGAAGTCTGAGTTGAAATCCT CCATTGAGAAAGGAATTACCTTTGCCAACAAGTGA
AA sequence Show only first row Show all	>Lus10038323 pacid=23158435 polypeptide=Lus10038323 locus=Lus10038323.g ID=Lus10038323.BGIv1.0 annot-version=v1.0 MNSVLKSAKALTGTASRSSLLRRGYSSDSVPDRKVTILGAAGGIGQPLSLLMKLNPLLSNLALYDIANTPGVAADVSHINTGSEVSGYVGDEQLGKALEG SDIVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTSLDVVRARTFYAGKANVPVAGV NIPVVGGHAGVTILPLFSQANPKANLSDEEIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECTFVQSNVTELPFFASKV RLGKNGVEEILGLGPLSDFEKQGLENMKSELKSSIEKGITFANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	0	1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	1.7	0.7969
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	1.7	0.8581
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	2.0	0.8303
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	6.3	0.7737
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	6.9	0.7638
AT5G62960			unknown protein		Lus10014556 [exp]	7.1	0.7788
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	11.3	0.7812
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	15.5	0.7600
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	16.3	0.7527
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	16.9	0.7377

Compare expression of checked genes

Lus10038323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.