Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 557 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 504 / 7e-179 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 460 / 5e-161 Melibiase family protein (.1.2) AT3G26380 94 / 2e-20 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024401 [exp] 580 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 563 / 0 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 555 / 0 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 476 / 6e-168 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 466 / 6e-164 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10029046 [exp] 461 / 2e-161 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 454 / 4e-158 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10038305 [exp] 449 / 1e-157 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10017365 [exp] 394 / 1e-135 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 602 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 578 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 507 / 6e-180 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 476 / 7e-168 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 464 / 7e-163 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 96 / 3e-21 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 94 / 1e-20 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 89 / 1e-18 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10038325 pacid=23158261 polypeptide=Lus10038325 locus=Lus10038325.g ID=Lus10038325.BGIv1.0 annot-version=v1.0 ATGTCTCAATCTACTTCTACGGCTGCGATCATGGTGGCTTTGGCTGCTCTGGTCCAGATCTGTGCCGCCGGTGCAGCGGGGCAAGTCACTGCCCGCAACC CGTTGAGTCGTCGGCGGGATCTCTTGTCTAATGGATTGGGCCTTACACCACCCATGGGATGGAATACTTATAATCACTTCCATTGGAACATCTCAGAGGA AATCATTAGGGAAACAGCGGATGCAATGGTCTCATCTGGACTTGCTGCCTTGGGATATCAGTACATCAATTTAGATGATGCTTGGGCTGAACATGAAAGA GACCCTCAGGGAAATTTAGTTCCAGACGCAGCAACATTTCCATCAGGAATCAAAGCTTTGGCAGACTATGTCCATTCCAAAGGCCTTAAACTTGGAATTT ACTCTGATGCTGGGAACCTTACATGCAGCAAGCTACAGCCAGGATCATTAGGATATGAAGAACAAGACGCCAATACATTTGCCTCCTGGGGAATTGACTT CTTGAAATATGATAACTGTCATGATAACGGATTAAGCCCAAAAGTGAGGTATCCAGTGATGAGCAAAGCATTGTTGAATACTGGAAGATCCATCTTCTTC TCCCTCTGTGAATGGGGACGTGAAGACCCTGCAACTTGGGCTCCAGCCGTCGGAAACAGCTGGAGAACGACCGGAGACATTAGCGATCACTGGGAGAGCA TGCTACGTCGTGCTGATGAAAACGATAAGTGGGCATCGTATGCTGGACCAGGAGGATGGAATGATCCTGACATGCTTGAAGTTGGAAATGGAGGGATGAC TAACGACGAATACATCGCACATTTTAGCATCTGGGCATTGGCCAAGTCTCCTCTCATCATTGGTTGCGACGTCCGAGCAATGAGCAACGAAACTTACCAG ATTCTAAGCAACAGTGAAGTGATTGCAGTGAACCAAGACCGACTCGGAGTTCAGGGAAGGAAGGTTAAGGAAGGTGATTTGGAGGTATGGGCAGGTCCAC TCACCAACAACAGAGTTGCAGTAGTCCTTTGGAACAGAGGCTCTTCCAGGGCTACAGTTACTGCTCCATTTTCGGACATTGGCCTTCGTGCAGATCTTGC TGATGCCAGAGACTTATGGGTGCACATGACGATCCCATCAGTGAAGGAACAAATCTCTGCCGACTTGGATTCTCATGCTTGCAAAATGTATATCCTCACT CCTAAGTAA
AA sequence Show only first row Show all	>Lus10038325 pacid=23158261 polypeptide=Lus10038325 locus=Lus10038325.g ID=Lus10038325.BGIv1.0 annot-version=v1.0 MSQSTSTAAIMVALAALVQICAAGAAGQVTARNPLSRRRDLLSNGLGLTPPMGWNTYNHFHWNISEEIIRETADAMVSSGLAALGYQYINLDDAWAEHER DPQGNLVPDAATFPSGIKALADYVHSKGLKLGIYSDAGNLTCSKLQPGSLGYEEQDANTFASWGIDFLKYDNCHDNGLSPKVRYPVMSKALLNTGRSIFF SLCEWGREDPATWAPAVGNSWRTTGDISDHWESMLRRADENDKWASYAGPGGWNDPDMLEVGNGGMTNDEYIAHFSIWALAKSPLIIGCDVRAMSNETYQ ILSNSEVIAVNQDRLGVQGRKVKEGDLEVWAGPLTNNRVAVVLWNRGSSRATVTAPFSDIGLRADLADARDLWVHMTIPSVKEQISADLDSHACKMYILT PK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038325 [exp]	0	1
					Lus10025483 [exp]	1.0	0.9801
					Lus10032696 [exp]	4.7	0.9344
					Lus10022993 [exp]	5.2	0.9344
					Lus10017800 [exp]	6.0	0.8973
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	6.6	0.9306
					Lus10002291 [exp]	8.7	0.9240
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	10.2	0.9113
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	11.2	0.9149
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	11.8	0.8681
					Lus10024757 [exp]	13.0	0.8591

Compare expression of checked genes

Lus10038325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.