Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73200 567 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G17820 566 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036188 [exp] 1257 / 0 AT1G17820 687 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10040647 [exp] 931 / 0 AT1G17820 709 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10018266 [exp] 873 / 0 AT1G17820 696 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155000 [exp] 723 / 0 AT1G17820 692 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Potri.018G152400 [exp] 711 / 0 AT1G17820 686 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10038326 pacid=23158273 polypeptide=Lus10038326 locus=Lus10038326.g ID=Lus10038326.BGIv1.0 annot-version=v1.0 ATGGCCTTGTTCCTGGTCTTCGTCGTCGGTTTCTTAGTCGGTGCGCTAGCTGTCGCTGCCATGGAAGCTCTGGGGGCCTACCTCTTGCTGCACCGACTCA ACCGTAACGTACCCGAGTCGCCGGAGCCTGGAGATTCGAAGAGAGACCTCGATCCCAGGCAGTCCCTCAAATTCGCTCATAACAAGAAGGGATCGGTTTG GGTGCTTGAGCCCGATAAAGTTCCGAAAAGTTGGTTGCTAGAGAAGGACCAAAAGAAGAAGAAAGATGCCTATGAGGTCGCCCCTGTTCGAAAAGATGCT AAAATTAGGGACCGGTTCCTTATTCTGGTAGATTCAGACGGTACACATACAGCTATTCCTTTGGTTGGTTGCCTTGTAGAAGCTGTTTCTGCTACATGCC TACCTTCAAAAAAATGGGCCAAAAGGTATCCCATTAAAATCGAAAGCAGGAGTTCGTTAATCTACAATGGAAGTAGAATAGTTTACATTTACCTCGAAAC ATCATGGGAGAAGGAGTCATGGTGTAAAGCGCTCCGTCTTGCCTCATGTGATGACAAACAGAGACTTTCCTGGTTTACCAAAGTAACTGAAGATTTCCAC TCTTATTTGATGTCCCTGAATACTGGGTACCGTTCGTTTTTGAAATCCTCTGCTGGTTTCAGTGAAGAAAGGGGGGATAGGGTGACCAAGTTTGATGGTA CAACATCAAAAGTTCGCTCTTTTTTGAAAAAGCTTTCTAAAAGAGCTTCCAAGAATATTGCTGACAGTAAGGAAACTCCTTTGAGCCATGAAAGGTCTCG TCCATTTCAAGATTCTGCATTAGCCACCAACTTTGCAAAGACTGTATTATCAGTGAAGCCCTCTTCTATCCCTGAAGAAGATGATACGGAATCATCGGTC AATTCTCGTTCTCAAACCCATGGCTTTTCTGATGGAGAATATGATGATAGGTACAATGTAGATGATGGAACACTTTGCTGGAATTTGCTTATTTCTCGGC TCTTCTTTGATGTCAAAGGCAATCAGGAGGTTAAGAGTTTGGTGCAAGCAAGGATTCAGCGGACACTGTCCGATATGAGAATTCCTTCTTACATAGGTGA AGTGATATGTACAAACCTACACCTTGGTAACTTGCCTCCTTACATACATGGAATTAGGGTTCTTCCTATGGACATGAATGATGTTTGGATGTGGGACGTT GATATTGAATATTCTGGTGGAGTGGTTCTGGATATCGAGACAAGGCTAGAGGTTTGTGATCCAGATCTGCAGAAAGGTATTGTAGACACAACTATCGGAT CAAGCACAGGGGGTGATATATCTTCAGACTTGCTGGAAGGTTTTGAATATTATGGGAAGCAGTTGAACATTCCTGAGGGGACAGCTGATACCCAAGAACA TAAGGAGGAAGGGGATCTTAAACTTGATGGGTCAAGAAGCATTTCAAGCAGCGTGCCAACATCAACACAAGTGTCCAAATGGAAGGCGATTGTTAATTCT ATTGCTAAACAAGTTTCACAGGTGCCGATTTCTTTGTCAATAAGGGTTTCTTCTCTCCGAGGAACATTGCGGTTACAGATAAAGCCACCTCCTTCTGATC AGCTATGGGTTAGTTTCACATCCATGCCTGATATAGAGTTTGAACTGGAGTCTTCCGTTGGGGATCACAAGATTAGCAGTGGGCGTATTGCTTTGTTCCT CGTCAATAAATTTAAGAGTGGTATTCGAGAGTCTTTGGTACTTCCGAACTGTGAGAGTGTGGCAATTCCATGGATGTTGGCAGAAAAGAACGATTGGGTG GATCGGAAAGTTGCACCTTTCATGTGGCTTAATCGAGAAGCAACCGGCGACCAAGCCCTTGCAGGCGAAGTTGTTAGTTCCCAACCACCACCTAAACAAA AAACCAAGACACAAGATAAAAAGAGACCCTCAAGCAATAGCCCAGACATCAATCATGGAGCTAGCAGGACTGGTGAAGATCAACACGTCGTAAAATCTGA ATCTTCAGATGCATTAGATAGAAAGAGACCCTCCAGCAATAGCCCAGACATCAATCATGGAGCTAGCAGAACTGGTGAAGATCAACACGTCGTAAAATCT GAATCTTCAGATGCATTAGCTAGCTCGGAAAAATCATCGCCAGAAGCCAGGAAAACGTTAGAAGAACTAACAACACCGTTGTTAGTAACCCAGGAACCAC CACAAGAAACGCACCAGAAGAATGTGGATCATGTTTCTGAAAGCTTATCAACAACGCCCAGGTCTCTAATAAACGTGGATAGGCCGATAGAAGGTGTTGA AGAACCAAAGAGATTGGGGCGTAAAGCGAGGATGCTGGATCTCGGCAAAAAAATGAGTGAGAAGCTCGAAGAGAAAAGGCGCCACATGGAAGAGAAAGGT AGAAGCTTTGTGGAGAAGATGAGAGATAAAACTGAAAATAAATAG
AA sequence Show only first row Show all	>Lus10038326 pacid=23158273 polypeptide=Lus10038326 locus=Lus10038326.g ID=Lus10038326.BGIv1.0 annot-version=v1.0 MALFLVFVVGFLVGALAVAAMEALGAYLLLHRLNRNVPESPEPGDSKRDLDPRQSLKFAHNKKGSVWVLEPDKVPKSWLLEKDQKKKKDAYEVAPVRKDA KIRDRFLILVDSDGTHTAIPLVGCLVEAVSATCLPSKKWAKRYPIKIESRSSLIYNGSRIVYIYLETSWEKESWCKALRLASCDDKQRLSWFTKVTEDFH SYLMSLNTGYRSFLKSSAGFSEERGDRVTKFDGTTSKVRSFLKKLSKRASKNIADSKETPLSHERSRPFQDSALATNFAKTVLSVKPSSIPEEDDTESSV NSRSQTHGFSDGEYDDRYNVDDGTLCWNLLISRLFFDVKGNQEVKSLVQARIQRTLSDMRIPSYIGEVICTNLHLGNLPPYIHGIRVLPMDMNDVWMWDV DIEYSGGVVLDIETRLEVCDPDLQKGIVDTTIGSSTGGDISSDLLEGFEYYGKQLNIPEGTADTQEHKEEGDLKLDGSRSISSSVPTSTQVSKWKAIVNS IAKQVSQVPISLSIRVSSLRGTLRLQIKPPPSDQLWVSFTSMPDIEFELESSVGDHKISSGRIALFLVNKFKSGIRESLVLPNCESVAIPWMLAEKNDWV DRKVAPFMWLNREATGDQALAGEVVSSQPPPKQKTKTQDKKRPSSNSPDINHGASRTGEDQHVVKSESSDALDRKRPSSNSPDINHGASRTGEDQHVVKS ESSDALASSEKSSPEARKTLEELTTPLLVTQEPPQETHQKNVDHVSESLSTTPRSLINVDRPIEGVEEPKRLGRKARMLDLGKKMSEKLEEKRRHMEEKG RSFVEKMRDKTENK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	2.8	0.8163
AT3G22520			unknown protein		Lus10006124 [exp]	6.0	0.7924
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	7.5	0.7861
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	8.4	0.7693
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	8.5	0.7504
AT5G61220			LYR family of Fe/S cluster bio...		Lus10034706 [exp]	9.4	0.7353
AT5G41980			unknown protein		Lus10024452 [exp]	11.7	0.7696
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	12.0	0.7896
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	12.6	0.7654
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	12.8	0.7421

Compare expression of checked genes

Lus10038326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.