Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73210 312 / 1e-105 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 295 / 8e-99 Protein of unknown function (DUF789) (.1) AT4G03420 285 / 5e-95 Protein of unknown function (DUF789) (.1) AT1G03610 276 / 1e-91 Protein of unknown function (DUF789) (.1) AT4G28150 247 / 8e-81 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G49220 175 / 3e-51 Protein of unknown function (DUF789) (.1) AT1G15030 169 / 9e-50 Protein of unknown function (DUF789) (.1) AT2G01260 168 / 4e-49 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT4G16100 162 / 2e-46 Protein of unknown function (DUF789) (.1) AT5G23380 127 / 5e-34 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036189 [exp] 550 / 0 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10018572 [exp] 275 / 4e-91 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 222 / 3e-70 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 214 / 2e-67 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 188 / 5e-58 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10040646 [exp] 179 / 3e-55 AT1G03610 133 / 6e-38 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 170 / 3e-49 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 174 / 5e-49 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 167 / 5e-48 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155200 [exp] 377 / 6e-131 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 357 / 3e-123 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 287 / 1e-95 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 281 / 1e-93 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 181 / 8e-54 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 176 / 7e-52 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 168 / 7e-49 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 161 / 4e-46 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 81 / 1e-16 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 68 / 3e-12 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10038327 pacid=23158455 polypeptide=Lus10038327 locus=Lus10038327.g ID=Lus10038327.BGIv1.0 annot-version=v1.0 ATGTCTCCCCCATCCAACCTAACAAGCTTCCTCCAATGCGTCACCCCGGTCCCTCCCGCAAAGTTCCTTCCTCAGAGCTCCGTCGGCGATCTGAATAGCC AGTGGCAGCCGCTACGAAGCAAAGGAACGGTGGAGTACTTCACCTTGTCGGATCTGTGGGATTGCTACAACGAGTTTAGTGCTTACGGTGCCGGAACGGA GGTATCGCTAGATGATGGAGAGAGTATCACCCAGTATTACGCTCCTTACCTCTCCGCCATCCACCTCTTCACGAACAAATCCGTCCCAGCACCTTTCCGG GCGGTAGCCGGCAGCGAGGTGTCGGAGTTTGAGATTACTGGTTCGTGGGATGATGATAGCCGGAGCGGGAGTGATAAGCTGTCCAGGTCTTTAAGCGACA CTTCCGCTAAGACTTGGGATACTGTTTCTGACGACTCAAGCTATGAGAACGATGGCTCTTCCCCTAAGAGCGAGAAGCTTGGTTCTTTGTACTTCAAGTA CGTTGAGACGTGCTCTCCTTACTGGAGAGTCCCGCTCAAGGAGAAGGTGACGGAATTAGCTAAAAAGCATCCGGGTCTGCTGACATTGAAAAACGTCGAC CTCTCCCCTGCGAGTTGGATGGCTGTTTCTTGGTATCCAATTTATCACATTCCAACTCGAAGGGGTGAGAAGGATTTGGAGACAGGGTTTCTAACATTCC ATACACTATCCTCGTCTTTCCAAGATTATGAATCCGAGAACGTGAACAACATAGGTTCTCTCGACATGGGAAAAACAGCAAGTGGAGGGAAGGGAACAGA TTTTGGTGACGGGAAGAGGGTTGATGGAATCCCCCTACCACCCTTTGGGCTGGCGACGTACAAGATGCAGGGGGATCTCTGGACAAGTGCAGCGCCCGAC TATGAAAAAATGGTGCATCTTAAAAGTGCAGCGGATTCATGGCTGAAGCAGTTGGATGTGCACCACCATGATTTCAGCTTCTTCACAAACCATTCTGCCA GATGA
AA sequence Show only first row Show all	>Lus10038327 pacid=23158455 polypeptide=Lus10038327 locus=Lus10038327.g ID=Lus10038327.BGIv1.0 annot-version=v1.0 MSPPSNLTSFLQCVTPVPPAKFLPQSSVGDLNSQWQPLRSKGTVEYFTLSDLWDCYNEFSAYGAGTEVSLDDGESITQYYAPYLSAIHLFTNKSVPAPFR AVAGSEVSEFEITGSWDDDSRSGSDKLSRSLSDTSAKTWDTVSDDSSYENDGSSPKSEKLGSLYFKYVETCSPYWRVPLKEKVTELAKKHPGLLTLKNVD LSPASWMAVSWYPIYHIPTRRGEKDLETGFLTFHTLSSSFQDYESENVNNIGSLDMGKTASGGKGTDFGDGKRVDGIPLPPFGLATYKMQGDLWTSAAPD YEKMVHLKSAADSWLKQLDVHHHDFSFFTNHSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73210			Protein of unknown function (D...		Lus10038327 [exp]	0	1
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	2.2	0.8356
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10027130 [exp]	4.9	0.7839
AT5G46600			Aluminium activated malate tra...		Lus10042571 [exp]	11.1	0.8074
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	17.5	0.8265
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	19.6	0.7870
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	20.0	0.7660
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	23.7	0.7914
					Lus10039584 [exp]	27.2	0.6526
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	30.2	0.7778
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	35.3	0.7803

Compare expression of checked genes

Lus10038327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.