Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 436 / 2e-148 Cyclin family protein (.1.2) AT4G19600 410 / 4e-139 CYCT1;4 Cyclin family protein (.1) AT4G19560 186 / 1e-53 CYCT1;2 Cyclin family protein (.1) AT1G35440 169 / 3e-49 CYCT1;1 cyclin T1;1 (.1) AT1G27630 141 / 5e-38 CYCT1;3 cyclin T 1;3 (.1) AT2G26430 92 / 5e-20 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G48630 52 / 4e-07 Cyclin family protein (.1.2) AT5G48640 48 / 5e-06 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036192 [exp] 861 / 0 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10040640 [exp] 518 / 0 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10018272 [exp] 201 / 7e-61 AT5G45190 116 / 3e-29 Cyclin family protein (.1.2) Lus10021927 [exp] 142 / 2e-37 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 74 / 4e-14 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10036509 [exp] 72 / 2e-13 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10041418 [exp] 62 / 8e-10 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10003151 [exp] 57 / 5e-09 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 57 / 6e-09 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148800 [exp] 542 / 0 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 531 / 0 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 417 / 9e-141 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 412 / 1e-138 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 213 / 4e-64 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G150500 [exp] 135 / 2e-35 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.008G043600 [exp] 90 / 3e-19 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.010G090400 [exp] 85 / 6e-18 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.002G246800 [exp] 57 / 8e-09 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.014G194900 [exp] 56 / 2e-08 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038329 pacid=23158326 polypeptide=Lus10038329 locus=Lus10038329.g ID=Lus10038329.BGIv1.0 annot-version=v1.0 ATGTTCCTGGCTGGTAAGGTGGAGGAGACTCCCCGTCCTCTGAAAGATGTCATTCTCATCTCCTATGAGATAATAAACAAAAAGGATCCACCGGCAGCCC ATAGAATCAAACAGAAGGAAGTATATGAGCAACAGAAGGAGCTTATTTTAGTTGCGGAGAAGGTTGTGCTTAGCACATTAGGTTATGACTTTAACGTCCA TCATCCATACAAACCTCTCGTTGAGGCAATTAAGAAATTCCAAGTTGCACAGAATGCACTTGCTCAAGTCGCATGGAATTTTGTTAATGATGGACTGAGG ACTTCGCTCTGCTTGCAATTTAAGCCACATCATATTGCAGCAGGTGCCATCTTCCTTGCTGCCAAGTTTCTCAAAGTAAAGCTTCCATCAGATGGGGAGA AGGTATGGTGGCAAGAATTCGATGTTACCCCACGCCAGTTAGAAGAGGTCAGCAATCAGATGCTCGAATTATACGAGCAAAACAAAGTGCCTCAGGCCCA GGGAGGTGAAGCGGAAGCTGGAGGTGGCCAAGCTCATTCAGGAACGTCTAAACCTCTCGCTGTGAACCCAGAGCATGCAACAAAGAAAACATCGTCTCGT ACATCGGTCGAACACACACATACCGAAAACCACAGGGCTACCAAAACAATGCAGAATCAAAGTAATGACAATGGCAGCGCAGAGGGGGATAGTGTTATCG AAGATCACAATGCAAATATGGAAAATAAGGATGTTCAACCTGCAGATGCAAATGATTTATCCCCTGAGGAGAGTGTGAGAGAAGCTCCAAACAAATCATC TAGGTCCGGGGCAGATAGAATAAATGGAAAAGAACAAGAGAGGGAAGGTTTGGATGCAGGAGAGGCAAGAGATGAAGATACGCCACGCAAGTCTACTAGC GGTCTAGTGGGGCGTAACTTGGACGTTAAAGAAGCCCCGGTAAGCCAATCCCCTAAAGATGCTATAAAGATGATTGACAGGGACAAAGTAAAGGCAGCAC TGGAGAAAAGAAAGAAAGCTCGTGGGGAAATGACTCGGAAAAAAGATGTGATGGATGAGGATGATCTCATCGAGAGGGAGCTAGAAGACGGGATAGAGTT AGCAGCGGCAGAGGATGAGAAGATGAAGCGAGAAAGGCGGCAGAACTGGTCCAAGATGGAAAATACCGGTCTAGATGGGGAGATTGAGGACGGGAACCAC GAAGAAGGGGGGACGTCTAGAGGGGGATTGGAGGTGGACAATGCCGAGGAAGGGGAAATGTTGGAAGATGGTATGGTTGTGACGAACAGCCGGAAAAGGA AAGCTGGGAGCCCCGCCGAGAGGCTGTCAGAGGGTAAGAAGAGACATGATCATATGCCACCGATGAAAAACAGCCATGACGATCACAGGAGGCACTCACA AGAGAATCATTCCTGA
AA sequence Show only first row Show all	>Lus10038329 pacid=23158326 polypeptide=Lus10038329 locus=Lus10038329.g ID=Lus10038329.BGIv1.0 annot-version=v1.0 MFLAGKVEETPRPLKDVILISYEIINKKDPPAAHRIKQKEVYEQQKELILVAEKVVLSTLGYDFNVHHPYKPLVEAIKKFQVAQNALAQVAWNFVNDGLR TSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNKVPQAQGGEAEAGGGQAHSGTSKPLAVNPEHATKKTSSR TSVEHTHTENHRATKTMQNQSNDNGSAEGDSVIEDHNANMENKDVQPADANDLSPEESVREAPNKSSRSGADRINGKEQEREGLDAGEARDEDTPRKSTS GLVGRNLDVKEAPVSQSPKDAIKMIDRDKVKAALEKRKKARGEMTRKKDVMDEDDLIERELEDGIELAAAEDEKMKRERRQNWSKMENTGLDGEIEDGNH EEGGTSRGGLEVDNAEEGEMLEDGMVVTNSRKRKAGSPAERLSEGKKRHDHMPPMKNSHDDHRRHSQENHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	1.0	0.9669
AT3G49601			unknown protein		Lus10000736 [exp]	2.4	0.8785
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	2.8	0.8971
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	3.0	0.8629
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	4.7	0.8616
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	5.5	0.8719
AT1G16740			Ribosomal protein L20 (.1)		Lus10033326 [exp]	5.5	0.8472
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	6.9	0.8785
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	7.0	0.8655
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	7.7	0.8619

Compare expression of checked genes

Lus10038329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.