Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 92 / 4e-22 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 69 / 7e-14 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 67 / 3e-13 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 66 / 8e-13 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 64 / 4e-12 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 60 / 6e-11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 59 / 2e-10 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25810 53 / 2e-08 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G13280 52 / 2e-08 ATTPS12, TPS12 terpenoid synthase 12 (.1) AT1G48800 51 / 7e-08 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 69 / 8e-14 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 63 / 5e-12 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10008611 [exp] 57 / 5e-10 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 57 / 7e-10 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042204 [exp] 54 / 8e-09 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10042202 [exp] 54 / 1e-08 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10040043 [exp] 50 / 2e-07 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10006355 [exp] 49 / 5e-07 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10008614 [exp] 47 / 2e-06 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085500 [exp] 91 / 1e-21 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.007G074466 [exp] 85 / 1e-19 AT5G23960 443 / 1e-150 terpene synthase 21 (.1.2) Potri.007G074400 [exp] 81 / 2e-18 AT5G23960 441 / 6e-150 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 81 / 4e-18 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016118 [exp] 77 / 1e-17 AT5G23960 197 / 1e-59 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 79 / 2e-17 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 79 / 2e-17 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 78 / 3e-17 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 78 / 5e-17 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 73 / 2e-15 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10038330 pacid=23158442 polypeptide=Lus10038330 locus=Lus10038330.g ID=Lus10038330.BGIv1.0 annot-version=v1.0 ATGTTGTCCCTCTTGGATGACACCTTCGATAACTTTGGTAGATACGAGGAGGTCCAAATCCTCACCCAAGCCATTCAAAGGTTCGATGAGATCTCTCTCG AAACCCTGCCGGAGATGATGAAGAAGATTTATCGAGTTATCATTGACTTGTACGACAAAATCGAGGTGGAACTTGAAACAATCGGGCACGCTTTCGCTGT TGACTATGCCAAGGAAGAGTTGGAGCGAAGCAGGAAACATGTAGCCACATCTGTAGAATGTTACATAAGAGAGCACAATGTGTCTGAGGAAGAAGCCATT GGAGTCCTGCGGGACGCGATTTCGGAAGTGCGGAAAGATATCGTCGAACGTTGTCAAAAGCCGACTCCGTCGCCGGTGGCCCTCACTGATCGAGTTCTCA ATTTCGCAAGATCCTTCAATGTGATTTGTCAGAATGGAGATGGCTATACAAATCCCCACCTTTTGAAGTCTCATATTGCTGCATTGTTTGTCAATCCGAT TCCGCTCTTTTGA
AA sequence Show only first row Show all	>Lus10038330 pacid=23158442 polypeptide=Lus10038330 locus=Lus10038330.g ID=Lus10038330.BGIv1.0 annot-version=v1.0 MLSLLDDTFDNFGRYEEVQILTQAIQRFDEISLETLPEMMKKIYRVIIDLYDKIEVELETIGHAFAVDYAKEELERSRKHVATSVECYIREHNVSEEEAI GVLRDAISEVRKDIVERCQKPTPSPVALTDRVLNFARSFNVICQNGDGYTNPHLLKSHIAALFVNPIPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	0	1
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	5.5	0.9505
					Lus10025095 [exp]	6.2	0.9485
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	8.7	0.9197
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	9.5	0.9482
					Lus10021782 [exp]	11.0	0.9478
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10038261 [exp]	12.2	0.8862
					Lus10023587 [exp]	12.2	0.9478
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	13.2	0.8913
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	13.4	0.9478
AT3G26950			unknown protein		Lus10032011 [exp]	13.9	0.8621

Compare expression of checked genes

Lus10038330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.