Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 196 / 2e-57 O-methyltransferase family protein (.1) AT4G35150 166 / 1e-46 O-methyltransferase family protein (.1) AT5G54160 151 / 7e-41 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 127 / 4e-32 O-methyltransferase family protein (.1) AT1G51990 126 / 6e-32 O-methyltransferase family protein (.1.2) AT1G63140 117 / 2e-28 O-methyltransferase family protein (.1.2) AT1G77530 114 / 3e-27 O-methyltransferase family protein (.1) AT3G53140 113 / 3e-27 O-methyltransferase family protein (.1) AT5G53810 107 / 3e-25 O-methyltransferase family protein (.1) AT1G33030 104 / 2e-24 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032304 [exp] 444 / 6e-154 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10006692 [exp] 412 / 4e-141 AT4G35160 152 / 2e-42 O-methyltransferase family protein (.1) Lus10006691 [exp] 404 / 8e-138 AT4G35150 150 / 1e-41 O-methyltransferase family protein (.1) Lus10007035 [exp] 372 / 9e-126 AT4G35160 137 / 7e-38 O-methyltransferase family protein (.1) Lus10018628 [exp] 340 / 4e-113 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 313 / 1e-102 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10018629 [exp] 313 / 2e-102 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017699 [exp] 312 / 5e-102 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10001510 [exp] 295 / 2e-95 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G120800 [exp] 346 / 2e-115 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 341 / 1e-113 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 338 / 4e-112 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 337 / 8e-112 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 332 / 4e-110 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 332 / 6e-110 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 330 / 4e-109 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 312 / 3e-102 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 296 / 8e-96 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 283 / 1e-90 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10038331 pacid=23158314 polypeptide=Lus10038331 locus=Lus10038331.g ID=Lus10038331.BGIv1.0 annot-version=v1.0 ATGTGCAACAATCCAGAGCTGTATTTTGAGTTCGAAGGTCCAATCACTGATGTTCATGGCTTTGTTGGTCAATCCTCAATGACTGGGTATTTTGAACCTT CTGGTTCACAGAACGTGGATGAGGTCTCTCAGTACGGCGGACAACACAATGCTGATGTCGTGGATGACGACGAGCCTGAGTACGATCCGAGTAACAACAG TGGGGAAGGGAAAGATAATCAGGTCTCGAGTGAGGACAACGAAGATACGCCAATTGACCCTCTCCATCTAGAGGGGGAGGATGCTGATGTCATAATCGGA GCGGGCGCTGCAACATCGTCTCGTACCCACCCCCACGTTGAATTCCAACTCATCCAACGGGTTCTCCTTCAGACCCGACACGTGTCGAACGCCAAGTATC CTCATCATACACGTGTCACACGATACCATTTCTTTCTACTGCCACCTCTGCAATTAATTAGTCATCAATTCCACGTACTACAACACTTATCTCCACGATC ATTCATTCCAACCCGTAAACTAGCTTCAGATAGAATGGATGCAGAGAGAGCAATGGAGCTTCTGGATGCTGAACCTCAACTTTGGAATCACAGTTTCGGA TACGTAAAGCCGATGACAGTCCAGTGTGCAGTCGAGCTTGGAATTCCGGACGTTATCCAAGCCCACGGACGTCCAATCACCCTCGTTAACCTCGTCGCCG GTCTCGGAATCTCGCCAGCGAAAGCTCCTTTCCTCAGCCGCCTGTTGCGTATGCTCGTGCACTTGGGTTACCTCACAGTCGAACGAGAAGAAGGAGGAGA AGAACGTTACTGGTTGACGCCTCTGTGTGCTTTGCTGGTCAAGGAAAACCCCTTCAACTCAAGGTCGTTCCTTTACACCTCGATCGACCCAATCATGCTC GAGCCATGGCGACACATGAGCGCTTGGTTTCAAAGCGACGCTGACCCCTCTCAACAACCTCCTTTCGCGTTTGCTCACGATGGGAAGAAGATCTATCAGG TCACAGCAGAAAATCCTAGATTCGGGGAAATGTTAAATGAAGCAGTGCAAGGGGATAGCTGGCTTTTGGCCAAGGTATTGGTGGCCAAGTGCAAGAGCTC ATTCCAAAGCTTGACTTCACTTGTCGACGTGGGTGGAAACACCGGCACTACCGCTAAGGCGATCGCCGAGGCCTTCCCGGGTATCGAATGTACTGTGTTT GATCTTCCCCATGTCATCTCCGCCCGGTCGGAGAAAGAAGAAGAGTTCCGGTCTAGTAAATTTCGGAATCTCAACTATGTCGACGGCGACATGTTCGAGG GAATCCCTTCCGCTGATGCCGTGCTCTTGAAGTGGGTGCTGTTTGACTGGGGGGACGAATCATGCTTGGAGATACTGAAACAATGCAAGAAATCGGTGGC GTCGATGACGAATAAGCCTGCCGGAAAGGTGATGATAGTCGACCATGTTCTTGGTCACGAGAGCTGCAGAGACGGTGCCTCCACAGAGACATCGCTGCTG TTTGATCTTGTGACAATGGGAGCAACTGAGGGCGCTGCAAGGACGGAACAGCAGTGGGGGGAGCTCTTCCGTCAAGCTGGATTCTCCAATTATAGAATCG CACCATTGGGTGGCTTGCGTGCTTTGATCGAAGCTTTTCCTTAA
AA sequence Show only first row Show all	>Lus10038331 pacid=23158314 polypeptide=Lus10038331 locus=Lus10038331.g ID=Lus10038331.BGIv1.0 annot-version=v1.0 MCNNPELYFEFEGPITDVHGFVGQSSMTGYFEPSGSQNVDEVSQYGGQHNADVVDDDEPEYDPSNNSGEGKDNQVSSEDNEDTPIDPLHLEGEDADVIIG AGAATSSRTHPHVEFQLIQRVLLQTRHVSNAKYPHHTRVTRYHFFLLPPLQLISHQFHVLQHLSPRSFIPTRKLASDRMDAERAMELLDAEPQLWNHSFG YVKPMTVQCAVELGIPDVIQAHGRPITLVNLVAGLGISPAKAPFLSRLLRMLVHLGYLTVEREEGGEERYWLTPLCALLVKENPFNSRSFLYTSIDPIML EPWRHMSAWFQSDADPSQQPPFAFAHDGKKIYQVTAENPRFGEMLNEAVQGDSWLLAKVLVAKCKSSFQSLTSLVDVGGNTGTTAKAIAEAFPGIECTVF DLPHVISARSEKEEEFRSSKFRNLNYVDGDMFEGIPSADAVLLKWVLFDWGDESCLEILKQCKKSVASMTNKPAGKVMIVDHVLGHESCRDGASTETSLL FDLVTMGATEGAARTEQQWGELFRQAGFSNYRIAPLGGLRALIEAFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10038331 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10025075 [exp]	4.6	0.6474
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	21.4	0.7287
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	29.0	0.7019
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	47.5	0.6499
AT5G59190			subtilase family protein (.1)		Lus10004683 [exp]	47.7	0.5688
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	50.0	0.6528
AT5G66540			unknown protein		Lus10042107 [exp]	69.7	0.6260
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	71.2	0.6351
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	74.7	0.6406
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000096 [exp]	81.4	0.5689

Compare expression of checked genes

Lus10038331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.