Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43000 231 / 3e-75 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 222 / 2e-71 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 192 / 3e-59 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 188 / 5e-57 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G02450 169 / 1e-49 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G61110 160 / 4e-47 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 157 / 1e-46 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT5G62380 158 / 4e-46 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G63790 155 / 2e-45 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G04060 154 / 1e-44 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036194 [exp] 429 / 2e-153 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031189 [exp] 236 / 4e-76 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 210 / 5e-68 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10015367 [exp] 199 / 8e-62 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 201 / 9e-62 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10007263 [exp] 198 / 1e-61 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10036749 [exp] 197 / 6e-60 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 195 / 5e-59 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10030446 [exp] 168 / 1e-50 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080900 [exp] 261 / 4e-87 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 259 / 5e-86 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 245 / 2e-80 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G066300 [exp] 243 / 1e-79 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 235 / 8e-77 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 227 / 2e-73 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.004G126901 [exp] 210 / 1e-65 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.017G082000 [exp] 208 / 5e-65 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.003G046700 [exp] 165 / 2e-48 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.008G089000 [exp] 156 / 3e-46 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10038332 pacid=23158458 polypeptide=Lus10038332 locus=Lus10038332.g ID=Lus10038332.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGAAGCTGAAGCTGATGATTATGACGACCAAGAGGAGAAACGCAGCCGTTTCATGTTTCGTCGAGGAGGACAAGGACGACGACGTCGCTT CACTTCCTGGGTTTCGATTTCACCCGACGGACGAGGAGCTTGTCGGATTTTATCTGAGGAGGAAAGTGGAGAAGAAGGCTTTGAAGATCGACATCATCAA ACTTTGCGACGTCTACAAGTACCAGCCATGGGAGCTCCCAAGGGACGGAGGAGGAGGAGGAGAAAGGGAGATGTACTACTTTTGCAGGAGAGGGAGGAAG TACAAGAACAGCGTCAGGCCCAACAGGGTGACAGCTGGCTGCGGATTCTGGAAAGCCACCGGAATCGACAAGTCCATTTATTCCGGCGGAGAGTGTGTCG TCGGCCTTAAGAAATCACTAGTTTACTACCGAGGAAGTGCCGGAAAAGGCACCAAAACTGACTGGATGATGCACGAGTTCCGTCTCCCTCCCAACGATGG CTATGAAGCAGAAGTTTGGACACTATGTCGTATATTCAAGCGAGAAGCTTCCTGCAGAAAGTACGCAACCACGGTGCAGCAACGGCAGGCGGTGAGTGAC CGGAAGCGGTCGTCGCCGGTGGAGAATCATGGCTATTATTCAAGCAACGATATGGTGTCATCAGGACAGCTGATGGCGATGAATTACTTCGACCACGGAA GCAGCACTAGTGCTGGTGATCAGCAGCAAGAAGCAGAAGAGATCAGTTTGGAAGAAGGGGAGTGGGATGAGCTTAGGCCAATGGTTGACTTTGCCCTCCT CGATCATCATCATCGCCATTCCATCTTCTTCACCTAG
AA sequence Show only first row Show all	>Lus10038332 pacid=23158458 polypeptide=Lus10038332 locus=Lus10038332.g ID=Lus10038332.BGIv1.0 annot-version=v1.0 MEEEKLKLMIMTTKRRNAAVSCFVEEDKDDDVASLPGFRFHPTDEELVGFYLRRKVEKKALKIDIIKLCDVYKYQPWELPRDGGGGGEREMYYFCRRGRK YKNSVRPNRVTAGCGFWKATGIDKSIYSGGECVVGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNDGYEAEVWTLCRIFKREASCRKYATTVQQRQAVSD RKRSSPVENHGYYSSNDMVSSGQLMAMNYFDHGSSTSAGDQQQEAEEISLEEGEWDELRPMVDFALLDHHHRHSIFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	0	1
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031189 [exp]	3.3	0.8820
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10007841 [exp]	5.7	0.8764
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	6.8	0.9006
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	7.5	0.8982
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	12.5	0.9113
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	13.4	0.8945
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	16.9	0.8854
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	18.2	0.8773
					Lus10038520 [exp]	29.2	0.8932
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	43.1	0.8832

Compare expression of checked genes

Lus10038332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.