Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31300 377 / 1e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G19645 375 / 4e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) AT4G10360 239 / 1e-78 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036199 [exp] 552 / 0 AT4G19645 379 / 6e-134 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10018287 [exp] 519 / 0 AT1G31300 375 / 5e-132 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10040622 [exp] 451 / 1e-161 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10034433 [exp] 233 / 4e-76 AT4G10360 321 / 3e-111 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Lus10019130 [exp] 231 / 1e-75 AT4G10360 315 / 7e-109 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118100 [exp] 439 / 1e-157 AT1G31300 349 / 7e-122 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.015G113200 [exp] 438 / 5e-157 AT1G31300 406 / 3e-144 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.005G206000 [exp] 356 / 6e-125 AT1G31300 348 / 2e-121 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.002G056600 [exp] 352 / 5e-123 AT4G19645 352 / 4e-123 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2) Potri.019G133500 [exp] 243 / 2e-80 AT4G10360 281 / 2e-95 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10038335 pacid=23158305 polypeptide=Lus10038335 locus=Lus10038335.g ID=Lus10038335.BGIv1.0 annot-version=v1.0 ATGACTGTACCCAAGGAGACAGTTATGGCTATTGAGGCTTACCGCAGTCAAGCTAAGGTTCTGGTTAAGAGTTACTTATTTGCAGACCCTTTTGTTCCAT ACACTTCTGTCCTTGGCGGTGTAGTTGCTTGCAAAGTGGTCTATGATCTTACTCAATTGATTAGCACATTTTACATCAAGGCCTACTCTGGTCTTACCAA AATGCAACGAGTCGAGTGGAACAACCGGGGTATGTCTTCAGTGCATGCAGTCTTTATAACTGCTTTATCGTTGTACTTTGTATTCTGGTCTGATCTATTC TCGGACAAGCCACAATCTGGTTACGTTACTCTACGAAGCTCGCCGTTATCCATATTTGGACTGGCGGTTTCTGTTGGATACTTCCTTGCAGATCTTGGGA TGATTTTTCAGTTTTATCCTTCTTTAGGCGGAATGGAATATGTGGTTCATCATTGTCTTTCTGCAATAGCAGTTGCATATTCCATGTTGTCTGGGGAAGG TCAGCTGTATACATATATGTGCCTCATCTCTGAAGTCACCACTCCTGAGATAAACTTGCGCTGGTATCTCGACATATCAGGAATGAAGAGATCAACGGCA TATCTTTTAAATGGAGTGTTAATCTTCCTCTTTTGGTTGATTGCACGAGTCTTGCTCTTCTTTTACATCTTCTACCACATTAACATGCACTTTGATCAGG TTGTCCAGATGACGTGGTTCGGGTGTCTGGTGGTGATGATGGTTCCATCAGCATTGTTTATAATGAACTTGATATGGTTTTCCAAGATCATCAAGGGTTT GATGAAAACTGTAGCTAAGAAACAATGA
AA sequence Show only first row Show all	>Lus10038335 pacid=23158305 polypeptide=Lus10038335 locus=Lus10038335.g ID=Lus10038335.BGIv1.0 annot-version=v1.0 MTVPKETVMAIEAYRSQAKVLVKSYLFADPFVPYTSVLGGVVACKVVYDLTQLISTFYIKAYSGLTKMQRVEWNNRGMSSVHAVFITALSLYFVFWSDLF SDKPQSGYVTLRSSPLSIFGLAVSVGYFLADLGMIFQFYPSLGGMEYVVHHCLSAIAVAYSMLSGEGQLYTYMCLISEVTTPEINLRWYLDISGMKRSTA YLLNGVLIFLFWLIARVLLFFYIFYHINMHFDQVVQMTWFGCLVVMMVPSALFIMNLIWFSKIIKGLMKTVAKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10038335 [exp]	0	1
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	1.0	0.7713
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	8.8	0.6641
AT5G42470			unknown protein		Lus10034533 [exp]	11.1	0.7181
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	14.8	0.7270
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	18.3	0.7098
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	27.6	0.6591
AT5G62960			unknown protein		Lus10027692 [exp]	34.4	0.7016
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	37.3	0.7071
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	38.2	0.6864
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	40.1	0.6060

Compare expression of checked genes

Lus10038335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.