Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19650 475 / 9e-163 Mitochondrial transcription termination factor family protein (.1) AT5G45113 350 / 4e-116 mitochondrial transcription termination factor-related / mTERF-related (.1) AT5G06810 334 / 1e-102 Mitochondrial transcription termination factor family protein (.1) AT3G60400 166 / 2e-44 Mitochondrial transcription termination factor family protein (.1) AT5G54180 64 / 1e-10 PTAC15 plastid transcriptionally active 15 (.1) AT1G74120 57 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT1G62085 53 / 4e-07 Mitochondrial transcription termination factor family protein (.1) AT4G38160 51 / 2e-06 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G62110 49 / 6e-06 Mitochondrial transcription termination factor family protein (.1) AT5G23930 49 / 1e-05 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012021 [exp] 316 / 1e-100 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10039774 [exp] 295 / 3e-93 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 178 / 9e-50 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 166 / 1e-44 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 48 / 2e-05 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G118200 [exp] 528 / 0 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.016G048300 [exp] 377 / 2e-124 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 367 / 3e-120 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 351 / 2e-114 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 176 / 2e-48 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 58 / 7e-09 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 57 / 2e-08 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.018G051600 [exp] 56 / 4e-08 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 52 / 6e-07 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 47 / 4e-05 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10038336 pacid=23158271 polypeptide=Lus10038336 locus=Lus10038336.g ID=Lus10038336.BGIv1.0 annot-version=v1.0 ATGATACTACTTCCCAGATTCTGCAAAACACCATGGAATTTATTCGATATGTTATCTCAAGTCGACCGCTTTACGAGAAACCCATCTCGGTTTTCAGCAA CAATCCGTTGCTTCCAAAGTGGTACCACTTCCGCTACAGCTAGAACAGTAGCTCAAGGTGTGTTGCTTGACTACTTATATTCCACCAGAAGCCTCCGATT CACAGATGCAGAGTACATCAGCAAGAACTCGCCTCGCTTCCTTGGAAGATTGCTCTCCAAGGTTTCCGGCCGGGAGGAGAAGGATTTGGGTCAGTCTTTG ACCAAGTTCCTTATGTACCACCCGATTAACGAGTTCGAACCGTTTCTCGAGAGCTTGGGTTTGAATCCGACTGAATGTTCTTCATTCCTGCAACAGGAGT CTGTGTTTTTGGGCGATGGCGGTGAAAAGGGAGGGCTGCTTCAGAACTTTCAGGTCCTAGCTGATTATGGAGTCCCTCGACGACAAATCGGCAAGGTCTT TACTGAAGCAATTGAGGTTTTCAGGTATTCTTCCACCGGGGTGTCATTGGCTTCGAAACTTGAGGGTTATGAGAAATTAGGTCTAAATAGAAATATAGTT ATTAAGATTGTCACCTGTTGTCCATCTCTCTTGATTAGTGATGTTGACTGTCAATTTGTTAAGTTTTTCGAGAAATTCAATGGGTTAGGGGTAGGATCTG ATTGGATTTGTAGGTACTTGAAGCCGAAAGGGTTGTATAATTGGAGAAGGATGCTGGAAACTATCAACATTCTGGAAAAAGTTGGTTTTAATGATCCTAC CATAGTGTTTGAAGGATCTGGAAAGGAGGTTCATGTGGCTCTTGTGTTGCTTTTCAAATTGGGTCTGAAGCCAGAAAAGATTTCATCTTTGTTCATAGAG TTTCCGGAGATACTCTCAGCAAAGTCTGTTAAGAATCTTAGGCAGTCTATCTTATTTATGTTTGAGATAGGAATGGAAGCAGAAGGATGTGCTCATATAG TGTTGAAGCATGCAAAGCTCTTGTGTTCCTGCTACTTGAAGAAGCGGCCGAAGAGGGTTTGTAAAGATTTGAACATCGATATTGACCATTTACGGGAAAT GATAATGAACGATCCGACGAAGTTGTTCAGTGTGGGTGGTGAGTCGAAGGAGACTTCAGTTGTTAAGCGAGTTGATCCCCCGGGGAATAGACTGGAGAAG CAAGTGTTCTTGACGAGATTGGGGTACGTGGAGAACACGGACGAAATGGTGATGGCGTTGAAGAAGTTTAGAGGAAGAAGGGACCAGTTGCAGGAGAGGT TCGATTACTTGGTCCGTGCTGGCCTGGATCCGAACGATGTCTCGAGCGTCATCAAGCGATCTCCAATGGTGCTTAACCAGACTATTCAAGTACTGGAGAA GAAGATTGACTGTTTGACAAGCTACTTGGGATATCCAGTTGATTCCATTGCCACATTCCCGGCATATCTGTGCTACGATGTCGAGAAGATCAGCAAGAGA TTCAGAATGTATGTATGGTTAAAAGAGAGAGGGACTGCAAAACCCAACTTGTCTTTGAGCACCATTCTTGCTTGTTCTGATAGACGGTTTGTAAAATACT TTGTAGATGTCCATCCTGATGGTCCAGCCATGTGGGAAAGTCTTCATAATGTATCTGCTTCAGAGCAAGGCTAG
AA sequence Show only first row Show all	>Lus10038336 pacid=23158271 polypeptide=Lus10038336 locus=Lus10038336.g ID=Lus10038336.BGIv1.0 annot-version=v1.0 MILLPRFCKTPWNLFDMLSQVDRFTRNPSRFSATIRCFQSGTTSATARTVAQGVLLDYLYSTRSLRFTDAEYISKNSPRFLGRLLSKVSGREEKDLGQSL TKFLMYHPINEFEPFLESLGLNPTECSSFLQQESVFLGDGGEKGGLLQNFQVLADYGVPRRQIGKVFTEAIEVFRYSSTGVSLASKLEGYEKLGLNRNIV IKIVTCCPSLLISDVDCQFVKFFEKFNGLGVGSDWICRYLKPKGLYNWRRMLETINILEKVGFNDPTIVFEGSGKEVHVALVLLFKLGLKPEKISSLFIE FPEILSAKSVKNLRQSILFMFEIGMEAEGCAHIVLKHAKLLCSCYLKKRPKRVCKDLNIDIDHLREMIMNDPTKLFSVGGESKETSVVKRVDPPGNRLEK QVFLTRLGYVENTDEMVMALKKFRGRRDQLQERFDYLVRAGLDPNDVSSVIKRSPMVLNQTIQVLEKKIDCLTSYLGYPVDSIATFPAYLCYDVEKISKR FRMYVWLKERGTAKPNLSLSTILACSDRRFVKYFVDVHPDGPAMWESLHNVSASEQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	0	1
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10013696 [exp]	1.0	0.9003
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	3.2	0.8463
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	5.5	0.8135
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	10.8	0.8225
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	11.8	0.7775
AT2G19490			recA DNA recombination family ...		Lus10017151 [exp]	12.5	0.8006
AT3G49990			unknown protein		Lus10010625 [exp]	14.0	0.8285
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	15.0	0.7798
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	17.7	0.7790
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	19.0	0.8119

Compare expression of checked genes

Lus10038336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.