Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45110 553 / 0 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 526 / 0 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT1G64280 337 / 1e-108 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 317 / 1e-100 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 154 / 4e-41 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G41370 147 / 3e-38 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036200 [exp] 839 / 0 AT5G45110 489 / 6e-168 NPR1-like protein 3 (.1) Lus10018289 [exp] 789 / 0 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 781 / 0 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10018756 [exp] 368 / 9e-118 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10024842 [exp] 234 / 2e-71 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 129 / 6e-32 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 129 / 7e-32 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10024843 [exp] 61 / 6e-11 AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117200 [exp] 686 / 0 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 669 / 0 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 589 / 0 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 572 / 0 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 569 / 0 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 394 / 1e-130 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G116900 [exp] 185 / 1e-55 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 150 / 2e-39 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 147 / 7e-39 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G113466 [exp] 84 / 2e-19 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF12313 [flax] [poplar] NPR1_like_C NPR1/NIM1 like defence protein C terminal CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Lus10038337 pacid=23158121 polypeptide=Lus10038337 locus=Lus10038337.g ID=Lus10038337.BGIv1.0 annot-version=v1.0 ATGGCTAATTCGTCTGAGCCATCGTCGTCTTTGAGCTTCACTTCATCATCCCATCTATCAAACGGCTCTGATCAGGCAATTCCAAGCCCTGATGTGAGTA GCTTCACCAAACTTAGCTCCAACTTAGAGTCTCTCTTGAATGGTGATTATTACAGTGATGCTGAAATTTTAGTCGACGGCGAATCTGTTGGCGTTCATCG CTGTATTTTGGCTGTGAGGAGTAAGTTCTTTCATGAATTGTTTAAAGGGGATAAGGGTTCAGAAAAGGGAGGGAAACTTAGGTATAGAATGGATGATATT TTGCCTTATGGGAAGATTGGACATGAAGCCTTCCTGGTTTTCTTGAGCTACTTGTATACTGGGAAACTTAAGCCGTTTCCAGTGGAGGTTTCAACTTGTG TGCATAGTGCTTGTGATCATGATGCTTGTAGACCTGCAATTAATTTTGCTGTGGAGTTGATGTATGCCTGCTCCATCTTTCAGATCGTCGAGCTGGTCTC TCTTTTCCAGAGACGCCTCCACGACTTTGTGGACAAGGCTCTTGTTGAAGATGTGATCCCAATACTTGTGGCTGCATTCCATTGTCAGTCAACTCAGGTC GTTGCTCATTGTGTCGATAAAATAGCACGTTCCAATATCGACGATGTTTGCATAGAAAAGGAACTGCCTTATGAGGTGGCAGAGAATGTTAAGCTGATCC GCCGCAAGCCTGTTTCTGACAACGACAAGGAAAAGAGAATCAAAAGAATACACAGGGCGTTGGACTCGGATGACGTGGAACTGGTGAAACTCCTCCTGAC AGAATCAGACGTAACTTTAGACGATGCTTATGCTCTCCATTATGCAGCAGCCTACTGTGATCCAAAGGTTGTCCAGGAGGTGCTCAACCTTCAACAAGCT GATGTCAACCGTAGAGACTCCCGCGGTTTTACAGTTCTTCACATTGCTGCAATGAGGAGGAAGCCGTCGGTTCCGTCGGTTCTGGTTTCACTGTTGGAGA AAGGGGCTTGTGCTTTGGAGACTACACGAGATGGAGAAAATGCAGTTAGCATTTGTAGGAAGTTGACTAGGCCGAAAGATTATCATTCGAAAACTGAGCA AGGACAGGAGGCGAATAAAGATAAGATATGCATTGAGGTTTTGGAGAGGGAGACGAGGAGGAACCCTATGGCATCAGAGGACATCACTGCAACTCCTCGT ACCCCAGATGAGGATCTGCACATGCAGCTATTGGACCTCGAGAACAGAGTGGCAATTGCCCGGTTCTTATTTCCGACGGAAGCCAAGCTAGCAATGGACA TCGCAAAAGCTGATACAGCACCCGAGTTTGACCTAAACGAGACACTAATAATGCAGAAGAGAAGAATCCTGACCCGGTTGCAAGCACTTAAGAAAACAGT GGAAACAGGGCGTCGCTACTTCCCCAATTGCTCCGAAGTCCTTGATAAGTTAATGGAAGATGACCATGATGACGTGTTGTATCTCGAGAAAGGCACCGCT GACGAACAACGGATAAAGAGGAACCGTTATCTGGAGCTTAAGGATGATGTTCAAAAGGCTTTCACCAGAGACAAGGCTGAGAACCGTATTGGATCGTCAT CTTCTTCTTCCTCAGCTCCATTAAAGAAAGGTTCCAACAAAAGGCTCAGAAAGGTATGA
AA sequence Show only first row Show all	>Lus10038337 pacid=23158121 polypeptide=Lus10038337 locus=Lus10038337.g ID=Lus10038337.BGIv1.0 annot-version=v1.0 MANSSEPSSSLSFTSSSHLSNGSDQAIPSPDVSSFTKLSSNLESLLNGDYYSDAEILVDGESVGVHRCILAVRSKFFHELFKGDKGSEKGGKLRYRMDDI LPYGKIGHEAFLVFLSYLYTGKLKPFPVEVSTCVHSACDHDACRPAINFAVELMYACSIFQIVELVSLFQRRLHDFVDKALVEDVIPILVAAFHCQSTQV VAHCVDKIARSNIDDVCIEKELPYEVAENVKLIRRKPVSDNDKEKRIKRIHRALDSDDVELVKLLLTESDVTLDDAYALHYAAAYCDPKVVQEVLNLQQA DVNRRDSRGFTVLHIAAMRRKPSVPSVLVSLLEKGACALETTRDGENAVSICRKLTRPKDYHSKTEQGQEANKDKICIEVLERETRRNPMASEDITATPR TPDEDLHMQLLDLENRVAIARFLFPTEAKLAMDIAKADTAPEFDLNETLIMQKRRILTRLQALKKTVETGRRYFPNCSEVLDKLMEDDHDDVLYLEKGTA DEQRIKRNRYLELKDDVQKAFTRDKAENRIGSSSSSSSAPLKKGSNKRLRKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	0	1
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	2.2	0.9038
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	5.5	0.8604
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	6.9	0.8504
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10028112 [exp]	7.2	0.8144
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	8.1	0.8477
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	8.5	0.8879
AT1G34750			Protein phosphatase 2C family ...		Lus10033453 [exp]	9.5	0.8660
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	11.4	0.8521
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	13.3	0.8509
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	18.7	0.8613

Compare expression of checked genes

Lus10038337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.