Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 246 / 2e-74 unknown protein AT3G50150 237 / 3e-72 Plant protein of unknown function (DUF247) (.1) AT3G50120 236 / 5e-72 Plant protein of unknown function (DUF247) (.1) AT3G50170 233 / 9e-71 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT2G36430 228 / 8e-70 Plant protein of unknown function (DUF247) (.1) AT3G50180 214 / 8e-63 Plant protein of unknown function (DUF247) (.1) AT3G47250 211 / 1e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 208 / 3e-61 Plant protein of unknown function (DUF247) (.1) AT5G22540 202 / 4e-60 Plant protein of unknown function (DUF247) (.1) AT3G50130 205 / 8e-60 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010065 [exp] 711 / 0 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 695 / 0 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 426 / 5e-147 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 383 / 4e-130 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 306 / 1e-99 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 303 / 1e-98 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 248 / 9e-77 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 248 / 1e-76 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 238 / 3e-73 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 378 / 3e-127 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 369 / 9e-125 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 349 / 6e-117 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 335 / 3e-111 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 320 / 2e-105 AT4G31980 236 / 1e-70 unknown protein Potri.017G145100 [exp] 273 / 6e-87 AT4G31980 225 / 1e-66 unknown protein Potri.003G181600 [exp] 263 / 3e-83 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 262 / 4e-83 AT4G31980 317 / 1e-101 unknown protein Potri.007G013800 [exp] 258 / 4e-81 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 258 / 5e-81 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10038338 pacid=23158509 polypeptide=Lus10038338 locus=Lus10038338.g ID=Lus10038338.BGIv1.0 annot-version=v1.0 ATGGACGTACCAAGAGCCAACGCCGGTGCAGTCGAAGTTCCGGAGCAGCTGCTGCACAGTATTCAACGAGGCTTACATAGTGTGCAGCCGCGTTCATCAA GCTGGAGCATCTTCAAAGTCCCGAACAAGCTCCGCACAGTGAATGCCGACGCCTACAGTCCTCATGTACTCTCAATCGGGCCTGTCCACAGCGGCAGGTC AAACGTCGCCGGGATGCAGACTCACAAGTGGCGGTATACACTCTCCTTGCTTGACCGAACCGAGGATACGGGTCCCACAATTCAATCCTGCCTCAAGGCC ATCCTCGGATTCGAATCCGAGGTCCGATTGTGCTACGCGGAAGCGATTGAGCTCAATTCGTCGGAGCTAGCCGAGCTTCTCTTCCTCGACGGTTGCTTCA TCCTTGAGCTCTTCCTTCGATACTCGAAGATCGAGCCGAATCTGAAGAACGGCGATCTGAAGAACGATCCGATTTTCACTACCTCGTGGATCATTTCAAC GCTGCAGAGAGACATGGCGCTGCTGGAGAACCAGATCCCTTTCTTCATCCTGGAGTGGCTGTTCGATTACACCGTACGCCGGAGCTCCAGCGGCATGCTC TCGGTGCCGTTGACGGATATCGCGCTCCACTTCTTCGAAGCCACAGTCAGCGGATCGCTGGTGAAAGCTCCCGCAGCCTCAAGCCGGATGAGGGAGAATA ATGCGATTCGGATGTCGAGCAGGCAGAGCACAAAACACTTGCTCCACTTGATCCACATCAGCTACTTGCCTAATTCCTCCCCGAAAATCGAGGAAAGGAT AGAAATCGAGGGAGAATCATCGTCGCCGGAGTTTGTGCCCTCGATCGAGGAGATGCACGTGGCGGGGATCAAGATCCAGATGAAAGAGGCGACGTCGTCC ATGTTTGAGCTGGAGTACAGCAAAGGAGTACTAAAGATCCCACAGCTCCGGATCCTGGATTCCACCGACGCGCTGTTGAGGAACATGGTGGCGTTCGAGC AGTGCTTCCATGGGTGCCAACAGTACGTGACGTCTTATGTGGTGCTGATGAACCAGTTTGTGTACACGATGAGGGATGTGGAGCTGCTGGAGCAGAGCTG CATCGTGGAGAACTATCTAGGGAGCAGAGAAGATGTGCCACGTCTGTTTGATAACATCTGCAAGCAGATAGGACTCCAGGAATTCTATTTCGCCAGACTG TGTAGTGATTTGAATAGTTTTTACGATCAGCCATGGATTCAGTGGAAGGTGACTCTGAAGCGAGATTATTTCACTTCGCCATGGACGCTTGTCTCCATGT TCGCCGTCTTCCTGATACTCATGATGACCCTTGTCCAGACGGTCTACATAGTTCTTTCGTATTATCCCAAAAATAACTAG
AA sequence Show only first row Show all	>Lus10038338 pacid=23158509 polypeptide=Lus10038338 locus=Lus10038338.g ID=Lus10038338.BGIv1.0 annot-version=v1.0 MDVPRANAGAVEVPEQLLHSIQRGLHSVQPRSSSWSIFKVPNKLRTVNADAYSPHVLSIGPVHSGRSNVAGMQTHKWRYTLSLLDRTEDTGPTIQSCLKA ILGFESEVRLCYAEAIELNSSELAELLFLDGCFILELFLRYSKIEPNLKNGDLKNDPIFTTSWIISTLQRDMALLENQIPFFILEWLFDYTVRRSSSGML SVPLTDIALHFFEATVSGSLVKAPAASSRMRENNAIRMSSRQSTKHLLHLIHISYLPNSSPKIEERIEIEGESSSPEFVPSIEEMHVAGIKIQMKEATSS MFELEYSKGVLKIPQLRILDSTDALLRNMVAFEQCFHGCQQYVTSYVVLMNQFVYTMRDVELLEQSCIVENYLGSREDVPRLFDNICKQIGLQEFYFARL CSDLNSFYDQPWIQWKVTLKRDYFTSPWTLVSMFAVFLILMMTLVQTVYIVLSYYPKNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31980			unknown protein		Lus10038338 [exp]	0	1
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10020312 [exp]	5.1	0.7561
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021048 [exp]	6.9	0.7797
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	16.4	0.7005
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	19.4	0.6846
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	20.0	0.7262
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	36.6	0.6557
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	41.0	0.7081
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	44.4	0.6780
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10038855 [exp]	44.8	0.6761
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	50.1	0.7024

Compare expression of checked genes

Lus10038338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.