Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 224 / 1e-67 Plant protein of unknown function (DUF247) (.1) AT3G50120 220 / 8e-66 Plant protein of unknown function (DUF247) (.1) AT4G31980 219 / 3e-64 unknown protein AT3G50170 214 / 3e-63 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 205 / 3e-60 Plant protein of unknown function (DUF247) (.1) AT3G50130 196 / 2e-56 Plant protein of unknown function (DUF247) (.1) AT3G47250 191 / 2e-55 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 192 / 5e-55 Plant protein of unknown function (DUF247) (.1) AT2G36430 190 / 5e-55 Plant protein of unknown function (DUF247) (.1) AT5G22550 188 / 5e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010064 [exp] 728 / 0 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 420 / 2e-144 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 379 / 1e-128 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 324 / 1e-106 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 323 / 3e-106 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 314 / 1e-102 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 260 / 3e-85 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 218 / 2e-65 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 209 / 1e-61 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146700 [exp] 393 / 6e-134 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 388 / 4e-131 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 364 / 2e-122 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 333 / 1e-110 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 332 / 5e-110 AT4G31980 217 / 1e-63 unknown protein Potri.017G145100 [exp] 275 / 7e-88 AT4G31980 225 / 1e-66 unknown protein Potri.018G029800 [exp] 234 / 2e-72 AT4G31980 317 / 1e-101 unknown protein Potri.001G046000 [exp] 230 / 2e-70 AT4G31980 232 / 3e-69 unknown protein Potri.003G181800 [exp] 228 / 7e-70 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 228 / 1e-69 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10038339 pacid=23158396 polypeptide=Lus10038339 locus=Lus10038339.g ID=Lus10038339.BGIv1.0 annot-version=v1.0 ATGGCCGGAGCTCCATTACCCGGCCACGTCGAAATCCCGGTAGAAACATGGCTAGCAAGCCTAGACAAAAAGCTCCAAGATTCATACCCACCTTCCTCAA ACTGGCGAATCTGCAGAGTCCCCAGAAAGCTCCAGAGCGTCAAGAAAGACGCTTACAGCCCACAGGTCATCTCAATCGGCCCATTCCACCACAAATCCGA TAACATCAAACCCTTCCACCTCCACAAACTCCATTACGCCACTTCCTTGCTCTCTCGAACAGCCCCCGCCACTCTCACCGCCTGCGCCAACTTCATCCGC CGCTTCGACCCTACAATTCGCGCCTACTACGCCGAGAACATCGACCTCTCCGTTACCGACTTCGCCGAAATCCTCATCGTCGACTCCCTCTTCATCATCG AGCTCTTCGTCAGATACTTTAACGTGGATCTCCGGCTTCAGCACGACCCGATTTTCACAAGCTCGTGGATGATTCTCACCCTCCAGAGGGATCTACTGCT GCTTGAGAATCAGATCCCTTTCTTTGTTCTGGAGATGCTGTTCATGATCACAGTCAAGAGAAGTGCAATCGGGCCGTCGATGCCTCCTTTGCCCGAGCTT GCTCTTGTTTTCTTCAAATCAGCTCTGAACGTCGACGATGGGGTTAGAGACGACGAAATCGACGTGAGCAGTACATGGAGCTGCCACCACTTACTGGATC TAACTTACAAAGCCTACTTCCGTCCATCTCCCAAGTTGAAGCTGATCAGAGAAGCCAATTGGGGTTTGGAAAGATCGGGGAGAAAACGCAAGGAAAAGGA GAAGAATAAGAAGACGAAGACGAATAAGAAGAAGAAATCTTGGGACCTAATCCAGTCAGCCAAAGAGCTGAAAACATCCGGGGTTGAGTTCACGAAAGCT AAGACCAACGCCCATCTGTTCGACATGGGTTTCAAAGACGGCAAGTTCAAGATCCCGACGCTAAGAGTCCACGACTCGACAGACTCGCTGCTGAGGAATA TGATGGCGTACGAGCAGTTCTCGCACGGGAGCGGGCAGTACTTGAGTTCGTACGTGATGTTGATGGACAGGCTGATCGATACGAAGGAGGATGTCCAAAT ACTGGAGCGGCGAGGGATCATCGACAATGAATTGGGTGATGCTGAGAACGTGTCGAGATTGTTCAATGAGATGTGCAAGGAGATTGTGTTCAAGGAGTTC TACTATGCCGGGCTGTGCGAGGAGGTGAATGGTTACTGTAGGACGCGGTGGCACAGGTCCAAGGCTTACTTTAAGAGTGTGTATCTCAAGAACATTTGGA CAATTGTGTCGTTGATTATTGCTGGTTGGCTGCTTCTTGCTACTACTATTCAAACTGTCTACTCTGTTATTGCCTACTATAAACAGTGA
AA sequence Show only first row Show all	>Lus10038339 pacid=23158396 polypeptide=Lus10038339 locus=Lus10038339.g ID=Lus10038339.BGIv1.0 annot-version=v1.0 MAGAPLPGHVEIPVETWLASLDKKLQDSYPPSSNWRICRVPRKLQSVKKDAYSPQVISIGPFHHKSDNIKPFHLHKLHYATSLLSRTAPATLTACANFIR RFDPTIRAYYAENIDLSVTDFAEILIVDSLFIIELFVRYFNVDLRLQHDPIFTSSWMILTLQRDLLLLENQIPFFVLEMLFMITVKRSAIGPSMPPLPEL ALVFFKSALNVDDGVRDDEIDVSSTWSCHHLLDLTYKAYFRPSPKLKLIREANWGLERSGRKRKEKEKNKKTKTNKKKKSWDLIQSAKELKTSGVEFTKA KTNAHLFDMGFKDGKFKIPTLRVHDSTDSLLRNMMAYEQFSHGSGQYLSSYVMLMDRLIDTKEDVQILERRGIIDNELGDAENVSRLFNEMCKEIVFKEF YYAGLCEEVNGYCRTRWHRSKAYFKSVYLKNIWTIVSLIIAGWLLLATTIQTVYSVIAYYKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	16.2	0.8171
					Lus10013985 [exp]	23.2	0.7663
AT2G27830			unknown protein		Lus10000385 [exp]	25.4	0.7442
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	34.3	0.7625
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	52.9	0.7445
AT2G27830			unknown protein		Lus10006996 [exp]	56.4	0.7245
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10032149 [exp]	157.6	0.6899
AT3G11210			SGNH hydrolase-type esterase s...		Lus10004815 [exp]	160.1	0.7003
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	185.0	0.6717

Compare expression of checked genes

Lus10038339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.