Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 66 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036201 [exp] 1507 / 0 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039197 [exp] 207 / 4e-55 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 206 / 8e-55 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10013551 [exp] 136 / 3e-32 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 115 / 6e-26 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 111 / 2e-24 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 99 / 9e-21 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117300 [exp] 746 / 0 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 716 / 0 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G012300 [exp] 208 / 2e-56 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.003G214100 [exp] 207 / 5e-55 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.005G240100 [exp] 120 / 3e-27 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 112 / 6e-25 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 95 / 2e-19 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 60 / 8e-09 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038340 pacid=23158128 polypeptide=Lus10038340 locus=Lus10038340.g ID=Lus10038340.BGIv1.0 annot-version=v1.0 ATGACTTCCTTACAGCAATTGCTAGCAGAGGAAGGATTCACCCGCGGAAAAAAGAAACATGGGAGCTTCAGAAACAGAGGCGACGAGTACTCTGCTCTTA ACTTCAAGCCTCCAATGTACATTTCTCGGGGCAACCCTGCCCGGAAAGGGTCGTCGAGGATGCAAAAAGAGACAGCGAATATCAACCCACCTGAGATGGA CCAAATCGCTGTGAGGGCGATTGTGTCCATACTCAGCGGATACGTAGGAAGGTACGCTAACGATGCGAACTTCCGACGGTCGATCCGCGAAAAGTGTAAT TCGTGTTTGTTACGGAAATTAAACAACTACGAAGACGATGACGAGGAAAGAATCCTGACAAACCTGGAACTCGCGGTCCAGAGCATCGACGAAACATTGG TCGAGAACAGAGCGACCAATGCATCGTCCAAGAAGCTGAATTCCCTAAGAAATTCGATTCACCTACTGACGATTGTGGCGTCGTTGAATTCAATGAAATC AAGAACTGACGGATTCACCACTACAGGCGGAATCCCAAACTCTTACCTATCCTCATGCGCCCAGCTGTACCTGTCCATTGTTTACAAGCTGGAGAAGAAC GACAGGATTTCCGCAATCCATCTGCTGCAGACTTTCTGCGACGCTCCATTACTGGCAAGGACTCATTTGCTTCCCGATCTCTGGGAGCATTTCTTCCTCC CGCACCTCCTTCATTTAAAAGTCTGGTATCACGAGGAACTCGAAATCCTATCCGAGAAAGGATTGAAATCACTCTGCAAAGTTTACAACGAGCAGATGGA TATCGGGACGGTTCAGTTTGCTCTGTATTATAAAAACTGGCTCAAAATCGGCGTCAAGGCTCCTTCCGTTCCGAATGTTCCTCTTCCATGGAAACAGAGC TTATCGAGACGGAGAACTCGATCCTCCATGGATTCTTCTGATTCTCACCTCTCCATCAATAGAAGTTTGTTTGATTATGTTTTTAGCCGAACACCTCACC GTCAATCATCGATGGAAATCAACCGTCAGGATGGAAATCCTCTGGTAGCTAGTACGAGCAAATCGAACTGTTCAAAGAGAAGCGGAAGGGGATCAGAGAT TACACATATACAAGAAGAAGAATACGTAAAATTCTTTTCCTGCAAGAGCATGGTAGCAGAATGTTTGGCAGATGGAAAATCGGCCGTGCGGAAGAAGAAC GATTCTTTCCGAAATTCAGCGGACGATTATTCTTCGAAGCCTCGTTATTCGAAAAACAACGTATTGAGGATATCAATCATCAAAATATGCACTTCAGACG TCCTCCCCGAGTGCGAATCGGCGATCCACGACATTGCCACAGAGTGGCTGAATTCTCCCGGAAGCGAGAATCTTCCACTAGTGGAGGACGCACTGTCTCG ACAGCCGGTGATCGAGTCAATGCTCGAGATCCTCTACGCCTCTGGAGACGAAGAGGTTCTCGAGTTAATTGTCACCCTTCTGGCGGAGCTAGTTACCAGA AGGAAGACGAACAGGATGGCAGTTCTCAACTACGATCCGCAGCTGGAGATTTTCATCAAGCTGATGAAAAGCAGCAGCCTTTTCCTCAAAGGAGCGGCGC TGCTCTACCAGCTGAGGCCGATGGCAAAACAGATGATATCGGCCGAATGGGTAGCCTTAGTGCTCCGCGTGCTGGAATTCGGCGATCAAACGCAGGTTCT TTTCGATGTTGTATGTGTGCCTCATGAAGCGGCATTGTACTTCTTGGAGCAGCTTATGACCGGGTTCGATGAAGATAAGAACTTGGAGAATTCTTGCCAA GTGGTTTCGCTTGGGGGGTTGAGTTTGTTGGTTCGGAGATTCGAGATTGGAGATTTCGAGGAGAGGAACCGGGTTGCGAGGTTGATGTGCAGTTGTGTGA AAGCTGTTGAGAGTTGTAGGGATTACTTGGCTGACAATTTGAGCAAAGGGTTGCTTCTTCAGCTTATTAGTGAAGAGATGAGAAAACAACACAGCATGCA AGTCTTTGGGTTCAAGTTGTTGACAGAGTTGCTCTGCCTCAGTAGAAGGACGCGGATCATAAGGGTATTGAGTGGAATCAATGGTGGATTTGAAGGGTTG AATGCAATGCACATATTTCTGTCGTATCTACAGAGGGCTGCATCCGAGGATCGCCCCTTGGTTGCAGCGCTACTTCTGCAGCTTGATCTTCTGGGAGATG CTATGAAGCATAGTATTTACAGAGAAGAAGCCGTGGAAGCGTTGATAGAGTGTTTGGATTGCGAGAGATGTGATTCGGAGGCTCAACAACAAACAGCAAG AGCTCTTCTAATGATGGGTGGATGCTTCTCTTACGAAGCCGGCCAGACGACAACGACAACAACAACAACGACAACGACATCAGCATCAGCGGCGGAATGG CTATTTCAAGAAAGATCGGAGGAAGCTGCATCAGAATGGCAAAGGAAACTAGCAGCAGTGCTGCTAAACAGCGGCGGGAGGAGATTCTTAACGGCTCTCT CTGCTGCAATAGCAAATGGGATCCCTAACTTAGTACACGCCAGCTTATTTACGGTGTCGTGGATGAACAACATGTTCCTAACATCCAGCGACCGAAACTT GGTACCCGCTGCACACTCCATACTCATGTCTCAACTCCTTCGTGATCAAGGTTAG
AA sequence Show only first row Show all	>Lus10038340 pacid=23158128 polypeptide=Lus10038340 locus=Lus10038340.g ID=Lus10038340.BGIv1.0 annot-version=v1.0 MTSLQQLLAEEGFTRGKKKHGSFRNRGDEYSALNFKPPMYISRGNPARKGSSRMQKETANINPPEMDQIAVRAIVSILSGYVGRYANDANFRRSIREKCN SCLLRKLNNYEDDDEERILTNLELAVQSIDETLVENRATNASSKKLNSLRNSIHLLTIVASLNSMKSRTDGFTTTGGIPNSYLSSCAQLYLSIVYKLEKN DRISAIHLLQTFCDAPLLARTHLLPDLWEHFFLPHLLHLKVWYHEELEILSEKGLKSLCKVYNEQMDIGTVQFALYYKNWLKIGVKAPSVPNVPLPWKQS LSRRRTRSSMDSSDSHLSINRSLFDYVFSRTPHRQSSMEINRQDGNPLVASTSKSNCSKRSGRGSEITHIQEEEYVKFFSCKSMVAECLADGKSAVRKKN DSFRNSADDYSSKPRYSKNNVLRISIIKICTSDVLPECESAIHDIATEWLNSPGSENLPLVEDALSRQPVIESMLEILYASGDEEVLELIVTLLAELVTR RKTNRMAVLNYDPQLEIFIKLMKSSSLFLKGAALLYQLRPMAKQMISAEWVALVLRVLEFGDQTQVLFDVVCVPHEAALYFLEQLMTGFDEDKNLENSCQ VVSLGGLSLLVRRFEIGDFEERNRVARLMCSCVKAVESCRDYLADNLSKGLLLQLISEEMRKQHSMQVFGFKLLTELLCLSRRTRIIRVLSGINGGFEGL NAMHIFLSYLQRAASEDRPLVAALLLQLDLLGDAMKHSIYREEAVEALIECLDCERCDSEAQQQTARALLMMGGCFSYEAGQTTTTTTTTTTTSASAAEW LFQERSEEAASEWQRKLAAVLLNSGGRRFLTALSAAIANGIPNLVHASLFTVSWMNNMFLTSSDRNLVPAAHSILMSQLLRDQG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	0	1
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	1.4	0.9549
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	2.4	0.9393
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	6.0	0.9120
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	6.2	0.9402
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	6.9	0.9173
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	8.5	0.8951
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10033003 [exp]	9.7	0.8979
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	9.8	0.9141
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	9.8	0.9274
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	11.8	0.9205

Compare expression of checked genes

Lus10038340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.