Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19670 607 / 0 RING/U-box superfamily protein (.1.2) AT5G60250 182 / 8e-50 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 179 / 3e-49 RING/U-box superfamily protein (.1.2) AT2G25360 173 / 5e-49 RING/U-box superfamily protein (.1) AT3G45580 161 / 5e-44 RING/U-box protein with C6HC-type zinc finger (.1) AT5G37560 160 / 2e-43 RING/U-box superfamily protein (.1) AT3G45470 147 / 8e-41 IBR domain containing protein (.1) AT3G53690 144 / 1e-38 RING/U-box superfamily protein (.1) AT2G26135 135 / 7e-35 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45540 126 / 6e-32 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036202 [exp] 1002 / 0 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10040616 [exp] 470 / 7e-163 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2) Lus10018293 [exp] 357 / 8e-119 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 206 / 1e-59 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036127 [exp] 151 / 3e-39 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000412 [exp] 144 / 2e-38 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 139 / 1e-36 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 120 / 2e-30 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10022063 [exp] 104 / 8e-25 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117600 [exp] 761 / 0 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 724 / 0 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.006G104700 [exp] 188 / 1e-52 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 187 / 1e-52 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G187700 [exp] 151 / 2e-41 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 150 / 4e-40 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 141 / 9e-38 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 107 / 3e-26 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 107 / 7e-26 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 102 / 1e-24 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10038341 pacid=23158381 polypeptide=Lus10038341 locus=Lus10038341.g ID=Lus10038341.BGIv1.0 annot-version=v1.0 ATGGAGGACGAAGCTGTTGTTGTCAATGATGGCTCTCCACTGAATGTATCGAGGGGAAATAATAACAGTAGATTGGAAGAAGATGAGGAGGATTTTCGAA GCTGCTGTGGAGATGATGATGCCGATGAAGAACTATGGAAGGAGACTGGAGAAACGGTGAAGGAAGAAGAGCCACCAAGAAAGGAAGATCTTGACGAGCA TTCTGTGAAGATGTTCTTCAAAGGGGTTTCCATAACTGAAGCTTCCGGGGAGGACTCTTCTTCTGGTCCTGGCTATTCTGGAATTGGTGTCATCATGGAA AGGAAGGAAAACGTTCCCCATATTCAGGTGCAAAAGAAGCTTGATTTTTATGTCGAGTCCTTGGTTGCTGACTACTTGGCTCTTATGGAGGGTCTTACTG AGCTTATCGGGACGAACATTTCCAATGTTTATGCCTTCACCGATTCCAGTTTGTTGTATAAACAGATAACACATGAGTATAAATTTGAGACTCCACTCCT AATAGCATTGAGGGAAAGGGTTGCTGAGCTCACTGCTGGTTTAGGTACCTTTACACTGAAACTTGTTCCCAGCTGCAATCTCGAGAGACCCATGCAATTA GCCCAGATAGCAATTGGGATCGTCTCTTCTCCGGCCATTGGAGATAAATCACACGACAATTGTTCTATCTGTTGCGAGGAAAAAATGTTATCTATGATGA TCACGATGAAGTGTTCTCACAAGTTTTGTTCACATTGTATGAGAACTTATGTAGAGGGAAAAGTGGAATCTTCTCAAGTACCAGTCAGATGCCCTCAATT GGGCTGCAGATATTACCTATCAGTCTCGGAATGTCAATCTTTCCTCCCTCATGCTTCAAATGAATCTTTCATGAAAGCCCTGGGAGAAGCTGATCCTCTT CTTTCTGACAGAATTTATTGCCCTTATCCAAATTGTTCAGTTTCGCTTGATCCTCGTGAATGTTTGTCTGCAAGAGCAAGCTCGTCAAATCTGTCAGATA ACAGCTGTGTTGAGTGCCCGGTTTGTCAAAGGTTCATCTGTGTTGATTGTGGTGTTCCCTGGCATTCTTCAACGAGCTGTGATGAGTACCAGGACCTCCC CCTGGGTGAAAGGGATTCTACTGAGATTACCTTGCATCAACTTGCTCAAAATAAAAGATGGATGCATTGTCAACAATGTCGTAGCATGATTGAGCTCACT CAGGGGTGCTATCACATGACGTGCTGGTGCGGTCACGAGTTTTGTTACTCGTGCGGTGCCGAGTACAGAGATGACCAACAAACATGCCAGTGCGTCTTCT GGGACAACGACAACAATACCGAAGATTTGATCACACAATCCGTCCAGGAGTCTGAACAATGGGCATGGGAGACTTTTAATTCGCTGCCCATGTTGATGGA CGCTTATTCGGAGCAAGAAAGATCGCAGCTTGCACTAATCCAGAGATTCCTCTCCGGAGGATTCAGTCTGAGCGATCACCATCCACCTCAATCCCCTCCT CGATGTACAGATTCATACCTCGACACCATGAAAGACCTCCACCAGCTTCCATGGCTCGAGAGATTCGTTTCGGTGATCAGCGACAACTACTGTGAGGACT TCATCCAGTGA
AA sequence Show only first row Show all	>Lus10038341 pacid=23158381 polypeptide=Lus10038341 locus=Lus10038341.g ID=Lus10038341.BGIv1.0 annot-version=v1.0 MEDEAVVVNDGSPLNVSRGNNNSRLEEDEEDFRSCCGDDDADEELWKETGETVKEEEPPRKEDLDEHSVKMFFKGVSITEASGEDSSSGPGYSGIGVIME RKENVPHIQVQKKLDFYVESLVADYLALMEGLTELIGTNISNVYAFTDSSLLYKQITHEYKFETPLLIALRERVAELTAGLGTFTLKLVPSCNLERPMQL AQIAIGIVSSPAIGDKSHDNCSICCEEKMLSMMITMKCSHKFCSHCMRTYVEGKVESSQVPVRCPQLGCRYYLSVSECQSFLPHASNESFMKALGEADPL LSDRIYCPYPNCSVSLDPRECLSARASSSNLSDNSCVECPVCQRFICVDCGVPWHSSTSCDEYQDLPLGERDSTEITLHQLAQNKRWMHCQQCRSMIELT QGCYHMTCWCGHEFCYSCGAEYRDDQQTCQCVFWDNDNNTEDLITQSVQESEQWAWETFNSLPMLMDAYSEQERSQLALIQRFLSGGFSLSDHHPPQSPP RCTDSYLDTMKDLHQLPWLERFVSVISDNYCEDFIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	0	1
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	1.0	0.9032
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	3.5	0.8591
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	4.7	0.8710
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	5.6	0.8203
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	6.7	0.8628
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10007926 [exp]	7.5	0.8345
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	8.4	0.8414
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	11.2	0.8506
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	12.6	0.8143
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	14.1	0.8485

Compare expression of checked genes

Lus10038341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.