Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 355 / 5e-126 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 352 / 1e-124 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 350 / 3e-124 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 353 / 4e-124 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 294 / 8e-102 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 278 / 2e-95 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 275 / 2e-94 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 154 / 7e-47 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 151 / 9e-46 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 144 / 6e-43 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036203 [exp] 422 / 1e-152 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 411 / 5e-148 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 407 / 2e-146 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 352 / 6e-125 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 351 / 2e-124 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 350 / 4e-124 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 350 / 6e-124 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 337 / 7e-119 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 291 / 9e-101 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119600 [exp] 385 / 7e-138 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 383 / 4e-137 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 355 / 4e-126 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 344 / 8e-122 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 339 / 1e-119 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 287 / 5e-99 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 279 / 1e-95 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 275 / 5e-94 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 150 / 3e-45 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 148 / 2e-44 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10038342 pacid=23158419 polypeptide=Lus10038342 locus=Lus10038342.g ID=Lus10038342.BGIv1.0 annot-version=v1.0 ATGGGACAGAAACCGCTGATCTACGCTTTCGTCTCCCGAGGAACTGTGCTTCTCTCCGAGTACACTGAATTCAGCGGCAATTTCAACTCCATAGCCTTCC AGTGCCTCCAGAAGCTACCGGCCTCCAACAACAAGTTCACTTACAACTGCGACGGCCACACTTTCAATTATCTCGTTGATAATGGCTACACATACTGCGT AGTTGCTGATGAATCGGCTGGAAGACAGCTGCCGATGGCTTTCCTGGAGCGCATCAAGGAAGATTTCATGACGAAGTATGGTAGTGGAAAGGCTACAACA GCTACTGCCAACAGCCTAAACAAGGAATTTGGGCCAAAATTGAAAGAGCACATGCAGTACTGCGTGGATCATCCTGAAGAGATAAGCAAGTTGGCCAAGG TTAAAGCTCAAGTTACTGAAGTCAAAGGTGTTATGATGGAGAACATTGAAAAGGTTTTGGATAGGGGTGAAAAGATAGAACTTCTGGTGGACAAAACTGA GAACCTTCATCAACAGGCACAAGATTTCCGATCGACGGGAACACAGATAAGGAGGAAGATGTGGCTACAGAATATGAAGATCAAGCTCATTGTTCTGGGG ATACTCGTTTCTTTGATCCTCATCATTGTACTCTCAATCTGCAAAGGTTTCAACTGTGGGAAAAAGTAA
AA sequence Show only first row Show all	>Lus10038342 pacid=23158419 polypeptide=Lus10038342 locus=Lus10038342.g ID=Lus10038342.BGIv1.0 annot-version=v1.0 MGQKPLIYAFVSRGTVLLSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQLPMAFLERIKEDFMTKYGSGKATT ATANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTQIRRKMWLQNMKIKLIVLG ILVSLILIIVLSICKGFNCGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	0	1
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	1.7	0.8934
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	2.2	0.9085
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	4.0	0.9001
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	4.5	0.8836
AT3G15890			Protein kinase superfamily pro...		Lus10011490 [exp]	4.9	0.8843
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	5.7	0.8668
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	7.5	0.8687
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	8.1	0.8648
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	9.2	0.8722
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	9.3	0.8267

Compare expression of checked genes

Lus10038342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.