Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07970 59 / 7e-11 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT5G27530 57 / 2e-10 Pectin lyase-like superfamily protein (.1) AT1G70500 56 / 8e-10 Pectin lyase-like superfamily protein (.1) AT2G41850 54 / 2e-09 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT2G43890 54 / 3e-09 Pectin lyase-like superfamily protein (.1) AT4G35670 54 / 3e-09 Pectin lyase-like superfamily protein (.1) AT1G23460 52 / 1e-08 Pectin lyase-like superfamily protein (.1) AT1G05660 52 / 2e-08 Pectin lyase-like superfamily protein (.1) AT2G43870 49 / 2e-07 Pectin lyase-like superfamily protein (.1) AT5G44830 49 / 2e-07 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036205 [exp] 119 / 1e-34 AT5G27530 178 / 3e-54 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 65 / 5e-13 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10002727 [exp] 64 / 8e-13 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 64 / 8e-13 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10018302 [exp] 61 / 5e-12 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10040604 [exp] 61 / 1e-11 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10032875 [exp] 60 / 3e-11 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029511 [exp] 58 / 1e-10 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10040610 [exp] 57 / 2e-10 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119700 [exp] 59 / 4e-11 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 57 / 2e-10 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 57 / 2e-10 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 57 / 3e-10 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 57 / 3e-10 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 57 / 3e-10 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 56 / 6e-10 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.017G006500 [exp] 56 / 6e-10 AT2G43890 552 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 56 / 9e-10 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.011G159801 [exp] 54 / 9e-10 AT1G23460 290 / 2e-97 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10038344 pacid=23158113 polypeptide=Lus10038344 locus=Lus10038344.g ID=Lus10038344.BGIv1.0 annot-version=v1.0 ATGGTGGACTCTGGAATGGAGGGATTATTATTAGAAACCATTGTAGTGTTCTTACTGATCATCACTTGTTCATCTTCTGACACACTTGAGAATTACAGTT CTAATGTGATTGCTTATGGAGCTGTTGGAGATGGCAACACTGGTGGGTTCCGATGTGGAGGAAAAGGGTATGTGAGAACGGTCACCTTTGAGAGGATCAC ACTCATCGAGGCACGAAACCCAATCATCATCGACCAGAATTACATGATCTGTCATTATGTTCCTGCAGAACCCTCATCAGATGATGAGATCAGTGACGTT CTGTACCGAGAGGTGCATGGATCTACCACTGACAAGAAAGCTATCATCTTCTTCTGTGGGCAACGGTACAGCAACATACGTCAACATAACCTCCGCAACT CCTGA
AA sequence Show only first row Show all	>Lus10038344 pacid=23158113 polypeptide=Lus10038344 locus=Lus10038344.g ID=Lus10038344.BGIv1.0 annot-version=v1.0 MVDSGMEGLLLETIVVFLLIITCSSSDTLENYSSNVIAYGAVGDGNTGGFRCGGKGYVRTVTFERITLIEARNPIIIDQNYMICHYVPAEPSSDDEISDV LYREVHGSTTDKKAIIFFCGQRYSNIRQHNLRNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	0	1
					Lus10028295 [exp]	1.0	0.9928
AT1G50660			unknown protein		Lus10002072 [exp]	2.4	0.9580
					Lus10001343 [exp]	6.3	0.9078
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10032048 [exp]	9.6	0.8896
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	9.8	0.9269
AT5G66930			unknown protein		Lus10000838 [exp]	11.6	0.8468
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	12.6	0.9103
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	14.4	0.8869
AT5G15110			Pectate lyase family protein (...		Lus10013267 [exp]	15.8	0.6851
AT1G04670			unknown protein		Lus10004041 [exp]	16.2	0.9069

Compare expression of checked genes

Lus10038344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.