Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19830 260 / 1e-88 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 71 / 7e-15 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G26555 65 / 1e-12 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 59 / 1e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 59 / 2e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 58 / 9e-10 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 56 / 2e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G18170 56 / 3e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 52 / 1e-08 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 54 / 2e-08 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036206 [exp] 286 / 1e-99 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10040937 [exp] 77 / 1e-16 AT5G13410 317 / 1e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009828 [exp] 76 / 2e-16 AT5G13410 314 / 1e-108 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031700 [exp] 70 / 7e-14 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10027129 [exp] 62 / 2e-11 AT4G26555 246 / 5e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031121 [exp] 62 / 4e-11 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 61 / 7e-11 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10038905 [exp] 58 / 9e-10 AT4G25340 313 / 1e-102 FK506 BINDING PROTEIN 53 (.1.2) Lus10038954 [exp] 57 / 1e-09 AT1G18170 193 / 1e-61 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119800 [exp] 276 / 5e-95 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G467100 [exp] 68 / 8e-14 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G068300 [exp] 66 / 1e-12 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 62 / 4e-11 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 60 / 2e-10 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G045600 [exp] 59 / 3e-10 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 56 / 3e-09 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.016G096600 [exp] 55 / 5e-09 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 54 / 1e-08 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G048300 [exp] 51 / 1e-07 AT1G18170 249 / 3e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10038345 pacid=23158476 polypeptide=Lus10038345 locus=Lus10038345.g ID=Lus10038345.BGIv1.0 annot-version=v1.0 ATGGAGATGAAATGTTTCGCCTGCAGAATATCATCATCCTACACACCGTACAACGTCACCACCGTCTGCCGCGCCGAATTGAAACCACCACCACCAGTCT CTGCAACTTCTTCAATTCCCCGACGAAAAGCTTTGGCAGCAGCATCCGTGGTGGTATTATCCACCTTGCCGTTTGTTACCGCCAATCCAGCTTCTTCTTC TTCCTTCTTCGACCTTCCAGATTCCGGTGGCGTCAAGGGCTTGGACCTCCGCGTCGGTACCGGCGCAGTCCCCACCGACGGCGATCAGGTGGCAATACAT TACTATGGAAGGCTGGGAGCGAAGCAAGGATGGCGATTTGACTCCACTTATGATCACAAGGACTCTAACGGGGAGCCGATTCCTTTTGTTTTCATTCTCG GTTCTGGAAAAGTGATTTCAGGGATTGAATCAGCCGTTAAATCAATGAAACTAGGAGGGATTCGTCGGATCGTCATTCCACCCTCCCAAGGCTATCAGAA CACCTCGCAAGAACCTTTACCCCCTAATTTCTTTGATAGGCAGAGGCTGTTCACCACAATCTTCAACCCGACCCGCCTTGCCAATGGAGAAGGATCCACA CTAGGAACACTCATCTTCGACATCGAGCTCGTCGGCCTAAGGAATTAG
AA sequence Show only first row Show all	>Lus10038345 pacid=23158476 polypeptide=Lus10038345 locus=Lus10038345.g ID=Lus10038345.BGIv1.0 annot-version=v1.0 MEMKCFACRISSSYTPYNVTTVCRAELKPPPPVSATSSIPRRKALAAASVVVLSTLPFVTANPASSSSFFDLPDSGGVKGLDLRVGTGAVPTDGDQVAIH YYGRLGAKQGWRFDSTYDHKDSNGEPIPFVFILGSGKVISGIESAVKSMKLGGIRRIVIPPSQGYQNTSQEPLPPNFFDRQRLFTTIFNPTRLANGEGST LGTLIFDIELVGLRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Lus10038345 [exp]	0	1
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	9.9	0.8879
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	16.3	0.8809
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	18.4	0.8749
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	22.8	0.8713
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	25.9	0.8697
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	27.7	0.8654
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	30.6	0.8620
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	32.3	0.8595
AT3G25805			unknown protein		Lus10022435 [exp]	32.7	0.8598
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	34.2	0.8581

Compare expression of checked genes

Lus10038345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.