Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45040 164 / 2e-52 CYTC6A cytochrome c6A, Cytochrome c (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036207 [exp] 256 / 7e-89 AT5G45040 188 / 5e-62 cytochrome c6A, Cytochrome c (.1) Lus10036206 [exp] 40 / 0.0002 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121101 [exp] 180 / 5e-58 AT5G45040 209 / 3e-69 cytochrome c6A, Cytochrome c (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [flax] [poplar] Cytochrome-c PF00034 [flax] [poplar] Cytochrom_C Cytochrome c
Representative CDS sequence Show only first row Show all	>Lus10038346 pacid=23158340 polypeptide=Lus10038346 locus=Lus10038346.g ID=Lus10038346.BGIv1.0 annot-version=v1.0 ATGTTGATCCTGTCTGCGGCGGTCACGCCCAACAATTCAACCATGCGGTTCAGACAGGTACCTCGAGCTCCGAAGAAGGAGACGACGAAGATAAATATAC TAACTAGCTTCGCTCCTCCGATCATTGCTGCAATCGTCGCTTTGTCTACCGTCGATGCCGCCCCCGTGTCCGCAACAACAATTGCTGGTGTGGATGTACA GAGAGGAGCGACATTGTTCAGTCGGAGTTGCATCGGCTGTCACGACGGAGGAGGCAACATCATCAAACCGGTGATTGAAAATGGAGTAGACACTGAAGAC GCCATCTATCAAATTACCTACTCCGGCAAGGCAAGAATGCCGGGATTTGGAGAGACGTGCAGTCCAAGAGGGCAGTGCACATTTGGGCCTCGTTTGAAGG ATGAAAAGATTAAGGTGTTGGCCCGGTTCGTAAAGTCGCAGGCCGATCAAGGCTGGCCCAAGCCCAACACCTTCCAACCTAACGAGTAA
AA sequence Show only first row Show all	>Lus10038346 pacid=23158340 polypeptide=Lus10038346 locus=Lus10038346.g ID=Lus10038346.BGIv1.0 annot-version=v1.0 MLILSAAVTPNNSTMRFRQVPRAPKKETTKINILTSFAPPIIAAIVALSTVDAAPVSATTIAGVDVQRGATLFSRSCIGCHDGGGNIIKPVIENGVDTED AIYQITYSGKARMPGFGETCSPRGQCTFGPRLKDEKIKVLARFVKSQADQGWPKPNTFQPNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10038346 [exp]	0	1
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	11.1	0.8468
					Lus10034328 [exp]	15.7	0.8410
AT3G49720			unknown protein		Lus10012481 [exp]	19.2	0.8403
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	22.2	0.8403
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	24.8	0.8403
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	26.8	0.6581
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017080 [exp]	27.2	0.8403
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	29.3	0.8403
AT5G22450			unknown protein		Lus10000530 [exp]	31.4	0.8403
					Lus10003082 [exp]	33.3	0.8403

Compare expression of checked genes

Lus10038346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.