Plant FIBer expression Database

Lus10038347 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45030 785 / 0 Trypsin family protein (.1.2)
AT2G35155 775 / 0 Trypsin family protein (.1)
AT3G12950 649 / 0 Trypsin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036208
[exp]
1094 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2)
Lus10018312
[exp]
909 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2)
Lus10017140
[exp]
876 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2)
Lus10031205
[exp]
737 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2)
Lus10031785
[exp]
724 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G121700
[exp]
961 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2)
Potri.015G121400
[exp]
946 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2)
Potri.011G143200
[exp]
787 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10038347 pacid=23158431 polypeptide=Lus10038347 locus=Lus10038347.g ID=Lus10038347.BGIv1.0 annot-version=v1.0
ATGGACAGGAACAGGTTAGATTTAAGATTGCATCACTCTGGATCGACGCAGTCGGAAGAATCTGCTTTGGACATGGAAAAAAACTACTGCCCTCATTCTA
ATCTTCCTTGGTCAAGTCCATCATCATTGCAGCCTCTCGCATCAGGCGGCCAGCACTCGGAGAGTAATGCTGCCTACTTCTCGTGGCCTACTTTGAGTAG
ATTGACTGACACAGCCGAAGATAGAGCAAACTATTTCGGTAACCTTCAGAAGGGTGTCTTACCCGAAATACTTGGCAGGTTGCCAACAGGGCAGCAAGCA
ACCACTTTACTCGAACTGATGACCATCAGGGCCTTCCACAGCAAAATCTTGCGTAGATTTAGCCATGGCACGGCTATTGGATTTAGAATTCGACGTGGTG
TTCTGACTGATATTCCTGCCATTCTTGTATTTGTTGCCCGGAAAGTGCATCGACAATGGCTCAGCCATGTCCAGTGCCTACCTTCTGCCCTTGAGGGTCC
TGTGGGGGTGTGGTGTGATGTGGATGTAGTGGAATTCTCATATTTTGGTGCTCCAGCCCCTACACCAAAGGAACAGCTGTATAGTGAACTTGTTGACGGT
TTAAGGGGAGGTGATCCATCAATTGGTTCTGGGTCTCAGGTGGCTAATCAAGAGACTTATGGAACCTTGGGTGCTATAGTGAAAAGCCGAACCGGAAACC
GACAGGTCGGTTTTCTCACAAATCGACATGTTGCAGTTGATCTGGATTATCCAAACCAGAAAATGTTTCATCCTTTGCCTCCCAGCCTTGGACCTGGTGT
CTATTTGGGTGCAGTAGAGAGAGCAACCTCTTTCATCACTGACGAGCTCTGGTATGGCATTTTTGCTGGAACAAATCCAGAAACATTTGTTCGGGCGGAT
GGAGCCTTCATTCCCTTTGCAGAAGATTTCAACATGAACAATGTCACTACATTAGTGAAAGGTGTGGGAGAGATCGGCGATGTCCATGTTATAGACTTGC
AGTCTCCAATCAACAGTCTTATTGGTAGGCAAGTTATGAAAGTTGGAAGAAGCTCTGGCTTGACAACTGGTACAATCATGGCCTATGCTCTTGAGTACAA
TGACGAGAAAGGCATTTGCTTTTTCACCGATTTCCTTGTCGTTGGCGAGAATCAGCAAACGTTTGATCTCGAAGGGGATAGCGGTAGCCTCATTCTCTTA
ACTGGCGAGCCTGAAGAGAAGCCACGACCGGTTGGAATCATTTGGGGCGGGACAGCAAACCGTGGAAGGTTGAAGCTTAAAATCGGTCAACCGCCCGAAA
ACTGGACTAGTGGAGTTGATCTTGGACGTCTACTTGACCTCCTTGAACTTGATCTCATCACCACAGCAGGAGGACTTCAAGTTGCGGTGCACGACCAAAG
AAACACATCGGCAGCAGTAATAGATTCTACAGTTGTCGGAGAGTCGTCGCCTCTGGTGCGAGTTCCATCAAAAGACAAAATGGAGGAGTGTTTCGAACCC
TTTAATTTGAACATTACTCAAGTTGAGTACGAGTCGCACGAGAAGCCAACTCCACCCGAGTTCCACATACAGGATGGTGCAGAAGCTGCTCCGGGCATCG
AACACCAGTTCATTCCGAGCTTTGCATTCGGACCTACGCTGCTGCATGATGAGAAGAAGCGACCGGATGATGATCCGGAACTAGAAAACCTTTCGGCATT
GAAGGAGGATGGGGCTGAAGGAGACATGTGTGTGTCACTGCAGTTGGGTGAGCCTGAGCCAAAGAGAAGAAGACAATAA
AA sequence
>Lus10038347 pacid=23158431 polypeptide=Lus10038347 locus=Lus10038347.g ID=Lus10038347.BGIv1.0 annot-version=v1.0
MDRNRLDLRLHHSGSTQSEESALDMEKNYCPHSNLPWSSPSSLQPLASGGQHSESNAAYFSWPTLSRLTDTAEDRANYFGNLQKGVLPEILGRLPTGQQA
TTLLELMTIRAFHSKILRRFSHGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPSALEGPVGVWCDVDVVEFSYFGAPAPTPKEQLYSELVDG
LRGGDPSIGSGSQVANQETYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDELWYGIFAGTNPETFVRAD
GAFIPFAEDFNMNNVTTLVKGVGEIGDVHVIDLQSPINSLIGRQVMKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILL
TGEPEEKPRPVGIIWGGTANRGRLKLKIGQPPENWTSGVDLGRLLDLLELDLITTAGGLQVAVHDQRNTSAAVIDSTVVGESSPLVRVPSKDKMEECFEP
FNLNITQVEYESHEKPTPPEFHIQDGAEAAPGIEHQFIPSFAFGPTLLHDEKKRPDDDPELENLSALKEDGAEGDMCVSLQLGEPEPKRRRQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45030 Trypsin family protein (.1.2) Lus10038347
[exp]
0 1
AT5G61760 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL ... Lus10009385
[exp]
1.7 0.8906
AT1G31420 FEI1 FEI 1, Leucine-rich repeat pro... Lus10033291
[exp]
2.4 0.8304
AT2G22730 Major facilitator superfamily ... Lus10019244
[exp]
9.5 0.8132
AT5G59020 Protein of unknown function (D... Lus10016455
[exp]
9.8 0.8288
AT5G45030 Trypsin family protein (.1.2) Lus10036208
[exp]
10.0 0.7938
AT1G58170 Disease resistance-responsive ... Lus10042488
[exp]
12.4 0.8072
AT3G53850 Uncharacterised protein family... Lus10010881
[exp]
15.3 0.7760
AT5G20680 TBL16 TRICHOME BIREFRINGENCE-LIKE 16... Lus10039914
[exp]
16.0 0.8264
AT2G25760 Protein kinase family protein ... Lus10025827
[exp]
17.7 0.8096
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10017605
[exp]
18.3 0.8156

Lus10038347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.