Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54950 345 / 5e-115 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 333 / 4e-110 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 297 / 1e-95 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 219 / 3e-67 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37060 103 / 6e-24 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 93 / 2e-20 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 92 / 4e-20 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT5G43590 90 / 2e-19 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G26560 82 / 1e-16 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040394 [exp] 351 / 2e-117 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 349 / 1e-116 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 339 / 5e-113 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 316 / 6e-107 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10036212 [exp] 296 / 2e-97 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10023512 [exp] 268 / 2e-84 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10022040 [exp] 147 / 5e-41 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10009340 [exp] 96 / 2e-21 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 94 / 1e-20 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123900 [exp] 478 / 1e-167 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 471 / 5e-165 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.010G221700 [exp] 334 / 5e-111 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.008G040500 [exp] 330 / 3e-109 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.005G210100 [exp] 219 / 2e-67 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 219 / 3e-67 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.014G033900 [exp] 97 / 1e-21 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 96 / 2e-21 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 96 / 3e-21 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 94 / 1e-20 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10038349 pacid=23158393 polypeptide=Lus10038349 locus=Lus10038349.g ID=Lus10038349.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTCAACTCAACCCCCTTCGACGTTGACAAGCTCACCTTGGACATATTCTCCATCCTTGAGAACAAGTTCCTCTTCGGCGGCTACGACGACG GCAAGCTCTCTGCACCTACTCCAATCCACCACCAACAATACACCGCCGGACCCAAAATTGATTTCCACACCACTTCCACCAGCAGGGTCGGCGGACTCCT GCCCTCCGACGCCGCCGGCCCCACCGACGAAATCCTCGCCGCCGCCTCCCTCGTCCGCCTCCAGTCCTTCCTCCGCCTCAAATCCGGCAACAAAAACGCA GCAATCGCCGATTACTTCGACGTCGTCGCCGGATCCGGCTCCGGCGGAATCCTCGCCGCCATGCTTTTCACCAAGGGGAAAGACGGCCGCCCGCTCTTCA CCGCCGACGCAGCGTTGAAGTTCCTCGTCGAAAACCGGAAGCGGCTCAACCGCTCCTCCAAAGGAGGAGTACTCCGGCGGGTTTTCGGATCGGGTAATCC ACCCGCCCGAAAAATCCTCTCCCGGGTTTTCGGGGAGTCCACGCTAAAGGACACGATGAAGTCGGTTCTGATCCCTTGCTACGACATGTCCACTCGCGGC GCGTTCCTCTTCTCTAGAGCCGACGCTGTCGAGATGGACGGCTACGATTTCAAGATGAGCGACGTCTCCCTAGCCACGTCGGCTGGGCCCACCGAACCAG TCGAGTTGAAATCCGTTGATAAAAAGACCAAAATCTTGGCCGTTAACGGAGGAACAGCGACGAATAATCCAACGGTTGCGGCGATCACTCATGTCCTCCA CAACAAGCAAGAGTTTCCCCTCTGCAACGGCGTCGAAGATCTGCTAGTCGTCTCCCTCGGCAACGGTGAGGAGGAGTTGTCTTCCTCGTCAGGATTTGCT ACGCCGGCGAGATTCGTGGGGATCGCAGGGGAAGGAGCTTCGGACATGGTGGATCAATCTGTATCAATGGCGTTCGGTGAGTGTCGAGAGAGCAATTACT TCCGGATTCAAGGTAACGGTACGGTACCGCAAACGCCGAAAAGAGGGAACAATAAAATGGAAGATCTAATTGAAACCATAGAAAGGATGCTGAGACACAA GAATGTGGAGTCGGTGCTTTTCAGGGGGAAGAAAATTGGGGAGAAAACGAATCTGGAGAAGCTGGAGTGGATCTCCGGCGAAATAATTAAGGAACAAGGG AAGAGGAGGAGCAGTATTTTGCCGCCGGTGGTGTTGAAGCAAGCGGCGACTCCTAGAACTTCATCGGCCACCACGCTTTCGACGTTGTCCTCTTCCTGTT GA
AA sequence Show only first row Show all	>Lus10038349 pacid=23158393 polypeptide=Lus10038349 locus=Lus10038349.g ID=Lus10038349.BGIv1.0 annot-version=v1.0 MAAVNSTPFDVDKLTLDIFSILENKFLFGGYDDGKLSAPTPIHHQQYTAGPKIDFHTTSTSRVGGLLPSDAAGPTDEILAAASLVRLQSFLRLKSGNKNA AIADYFDVVAGSGSGGILAAMLFTKGKDGRPLFTADAALKFLVENRKRLNRSSKGGVLRRVFGSGNPPARKILSRVFGESTLKDTMKSVLIPCYDMSTRG AFLFSRADAVEMDGYDFKMSDVSLATSAGPTEPVELKSVDKKTKILAVNGGTATNNPTVAAITHVLHNKQEFPLCNGVEDLLVVSLGNGEEELSSSSGFA TPARFVGIAGEGASDMVDQSVSMAFGECRESNYFRIQGNGTVPQTPKRGNNKMEDLIETIERMLRHKNVESVLFRGKKIGEKTNLEKLEWISGEIIKEQG KRRSSILPPVVLKQAATPRTSSATTLSTLSSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	0	1
AT1G70140		ATFH8	formin 8 (.1)		Lus10042154 [exp]	3.5	0.7598
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	3.6	0.7792
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	15.9	0.6467
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	23.4	0.6722
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	32.1	0.6558
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	36.6	0.6525
					Lus10016420 [exp]	48.7	0.6414
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10019256 [exp]	51.1	0.5924
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	68.0	0.6110
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	70.2	0.6141

Compare expression of checked genes

Lus10038349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.