Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39220 234 / 3e-74 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 222 / 6e-70 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 210 / 9e-65 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 142 / 3e-40 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37050 61 / 1e-10 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37060 57 / 3e-09 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 54 / 2e-08 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT5G43590 51 / 3e-07 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G26560 49 / 2e-06 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038349 [exp] 329 / 3e-112 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036212 [exp] 226 / 6e-73 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10040394 [exp] 223 / 2e-70 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 220 / 2e-69 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 218 / 9e-69 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10023512 [exp] 183 / 2e-54 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10022040 [exp] 151 / 2e-44 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10036213 [exp] 98 / 2e-26 AT4G29800 56 / 1e-10 PATATIN-like protein 8 (.1.2) Lus10042584 [exp] 95 / 5e-24 AT3G63200 239 / 3e-79 PATATIN-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123900 [exp] 299 / 2e-100 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 291 / 3e-97 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.008G040500 [exp] 223 / 2e-70 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 218 / 1e-68 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.005G210100 [exp] 147 / 2e-42 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 146 / 7e-42 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.002G128300 [exp] 58 / 1e-09 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 57 / 2e-09 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 57 / 2e-09 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 57 / 2e-09 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038350 pacid=23158297 polypeptide=Lus10038350 locus=Lus10038350.g ID=Lus10038350.BGIv1.0 annot-version=v1.0 ATGAAGTCCGTTCTGATCCCTTGCTACGACATGTCCACGCGCGGCGCGTTCCTCTTCTCCAGAGCCGACGCTGTCGAGATGGACGGCTACGATTTCAAGA TGAGCGACGTTTGCCTCGCCACCTTTGGTAGGCCAGTGGAGATGAAATCCGTTGATAAAAAGAACAAGATCCTAGCCGTTGATGGAGCGATTACTATGAA CAATCCAACGGCTGCAGCCATAACTCACGTCCTACACAACAAACAAGAGTTCCCCCTCTGTAACGGCGTCGAGGATCTGCTGGTCGTCTCCCTCGGCAAC GGCGAGGATTCGACGAACTCCGGCCAGACCAATTTCAGGTCGACGCCGGCGAGATTTGTTCGGATCGCAGGGGAAGGAGCTTCGGATATGGTGGATCAAG CCGTATCAATGGCGTTTGGTGAGCTTGGGGAGAGCAATTACTTCCGTATTCAAGGCAGTGGCAGCCGTAAAAGATGCGATAGAACGGCGGATCTTGTTAA AGCGACGGATTGTATGCTGGATCAGAAAATTGTGGAGTCGGTGCTGTTCAAGGGGAAGAAAATGGGGAAGAATACGAATATGGAGAGATTGGAGTGGGTT TCAGGGGAGGTGATTAAAGAGGAAGGGAAGAGGAGAATTAACATTTTGCCGGCGGTGGTTTTGAAGCAAGCGGCGGCGACTCCGAGAACTTCCTCCGCCA CCACGCTTTCCACATTCTCGTCTTCCTGCTAG
AA sequence Show only first row Show all	>Lus10038350 pacid=23158297 polypeptide=Lus10038350 locus=Lus10038350.g ID=Lus10038350.BGIv1.0 annot-version=v1.0 MKSVLIPCYDMSTRGAFLFSRADAVEMDGYDFKMSDVCLATFGRPVEMKSVDKKNKILAVDGAITMNNPTAAAITHVLHNKQEFPLCNGVEDLLVVSLGN GEDSTNSGQTNFRSTPARFVRIAGEGASDMVDQAVSMAFGELGESNYFRIQGSGSRKRCDRTADLVKATDCMLDQKIVESVLFKGKKMGKNTNMERLEWV SGEVIKEEGKRRINILPAVVLKQAAATPRTSSATTLSTFSSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	0	1
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	1.4	0.9462
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	2.0	0.9494
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	3.2	0.9320
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	5.2	0.9445
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	6.5	0.9194
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	7.2	0.9418
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	12.8	0.9221
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	13.0	0.9252
AT2G20760			Clathrin light chain protein (...		Lus10011194 [exp]	13.4	0.9180
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10007294 [exp]	14.4	0.9204

Compare expression of checked genes

Lus10038350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.