Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09980 1005 / 0 Putative serine esterase family protein (.1.2) AT1G58350 1003 / 0 ZW18 Putative serine esterase family protein (.1.2.3) AT4G25770 43 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036214 [exp] 854 / 0 AT1G58350 640 / 0.0 Putative serine esterase family protein (.1.2.3) Lus10036215 [exp] 656 / 0 AT1G58350 349 / 3e-115 Putative serine esterase family protein (.1.2.3) Lus10042993 [exp] 48 / 3e-05 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 47 / 4e-05 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077700 [exp] 1105 / 0 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 1095 / 0 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.001G079400 [exp] 45 / 0.0002 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G096035 [exp] 43 / 0.0006 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 43 / 0.001 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676) CL0028 [flax] [poplar] PF12394 [flax] [poplar] DUF3657 Protein FAM135
Representative CDS sequence Show only first row Show all	>Lus10038351 pacid=23158172 polypeptide=Lus10038351 locus=Lus10038351.g ID=Lus10038351.BGIv1.0 annot-version=v1.0 ATGATACGGCATTTGGGATGGTTGATTGGTCTAAATCCTAAAAGTGGAACAGAGAAGAGGCTACCTGATGCAATCACACACACCGCCAGAATCAGGCCAT TTACTATGTCGGAAACTGTGCAAGAGATTGCTATTTACCTCCACAGGTTTCACAACCTTGACCTCTTCCAACAAGGATGGTACCAAATCAAGATTACCAT GAGATGGGAAGATGGTGAAATGATGTCTGTGGCAACTCCTGCAAGAGTTGTTCAATATGAAGCTCCTGATCTAGGCTTTGATGACGTATATGGAGTTTGG CGGATCGATGATACGGATAATAGCTTCTTGACACCACCCTTCCGAATAAGATATGCAAGGCAGGATGTTCGGTTGTCTATGATGATATCATTTAATTTAT CTCTGACTAAATGTAAGGGTCCATCTACCTCTGCTGTTATTATGAAGTTTGAGCTTTTCCAAGCTCCTATAACTGAAAGTGGCCGTCAATTTCTATCTAC TTTGGATGCATCCTCTGTTGCAGTCCACGAGTTTCGAGTTCCTCCTAAAGCTCTTCTAGGGGTGCATTCATATTGCCCTGTTTATTTTGATGCGTTTCAT GCTGTGCTTGTTGATGTGAGCGTGCACGTCACCCTATTACAATCTGGTCATTACAGGAAGGTACGCAGTGATTCTTCTGATTCTTCCGCAGAGGGAAATG ATGGGATTAATCAAGACTTGGTACCTGTTGATCTGAAAGAAATTGCACTGGTTAAAGCCTTTCTAATGGCACGCGACACATTGGTGGAAGAGATGCATAA ACTTAGCAAAGCCATCAACCAAGTTATTGATTTAACTGAATTTAGAAGAAAGATGAATGATATCAAGATGTTAGACTCTGTCTGGCAAGCAAACTTGGGT ACTTCAGACGGCGAAGTTTCTGGACAAGGCAAGCAACAAAATGGTCTTGAGACAGAAAATGCTCCAGTAGATTGTCTGAGTGAGAGGTTGGCTAACCCTT TATCAGTGGATGAATTGACAAATATTTTCCAGACATTGGGGGCCCAACAATCATACTTATGGGGAGTCTTTATGCAGTTTCACAGGGAAAACAAGGTTCA TATATTGGAATTTTTGCGTGATGGATGGAGCAAGAACCGAAGAGTGGAATGGTCAATATGGATGGTGTACTCAAAGGTTGATATGCCTCATCATTACATT AGCAGCGGAAATGATGAACCTTCCCACAGCGTACCCAGAAGAGTTGCAGCTTTGTGGAAGTTAGCTATTGATCCTGCTCAAGCTGCAGCCGCACGTGCTG AGCTTCATCGACGAAGCATAGCTCAAATGAGGATTAATACTTGTTCAATTCAAGACCTGTATATATTCGGTGACCCCTTGCGTATTCCTATTGTAAACAT TGAACGTGTCATAAATGCACCACGGCGTACTATGAGTGAGAATTCATACTTCAAAAACATGGACATGATAAATTCACACTGTCTGGGTTTGGAGCCTAAT TTTGAGGCTGGAGACAAAGCATTGCATCCTACCATTCAACCAACCGGCCGTGACTTGAAGATTGTGGTTTTTGTGCATGGTTTTCAAGGACATCATCTAG ATCTACGGCTCGTTCGGAATCAGTGGCTGTTGATAGACTCCAAAATAGAGTTTCTGATGTCACAGGCGAATGAGGAGAAAACGTCTGGAGATTTTAGAGA AATGGGACAAAGACTAGCTCAAGAAGTGGTTGCTTTTATCAAGAAGAAAATGGATAAAGTTTCGAGATCAGGTCACTTGAGAGATATCAAAATCAGCTTT GCCGGCCATTCTATTGGAAATGTAATCATAAGATCAGCACTATCAGAGGTTGTCATGGAGCCTTATCTAAGATACCTTTACACCTATGTTTCCGTATCTG GTCCACACTTGGGTTATCTTTACAGTTCAAACTCTTTATTTAATTCTGGAATGTGGCTCTTGAAGAAGCTCAAGGGAACACAATGTATCCATCAGCTTAC TTTCACAGATGACCCAGATCTCAGAAATACTTTCTTCTACCAGCTTTGTCAGCACAAGACACTAGACCACTTCAAAAATATAATCCTGATGTCATCACCC CAGGACGGTTATGTGCCTTACCATTCAGCTAGAATCGAACTGTGCCAGGCTGCAACCCTGGACCACTCCAAAAGGGGCAAGGTATTCCTGGAGATGCTGA ATAACTGCTTGGATCAGATCCGGACGTCAACCACAGAGCAACGGTTGTTTATGCGATGCGATGTCAACTTCGATACGACAGTTTACGGAAAGAATTTCAA CACGTTCATTGGCCGGGCTGCACATATCGAGTTTCTGGAGTCTGATGTCTTTGCAAAGTTCATCATGTGGTCTTTCCCTGAACTATTCCGTTGA
AA sequence Show only first row Show all	>Lus10038351 pacid=23158172 polypeptide=Lus10038351 locus=Lus10038351.g ID=Lus10038351.BGIv1.0 annot-version=v1.0 MIRHLGWLIGLNPKSGTEKRLPDAITHTARIRPFTMSETVQEIAIYLHRFHNLDLFQQGWYQIKITMRWEDGEMMSVATPARVVQYEAPDLGFDDVYGVW RIDDTDNSFLTPPFRIRYARQDVRLSMMISFNLSLTKCKGPSTSAVIMKFELFQAPITESGRQFLSTLDASSVAVHEFRVPPKALLGVHSYCPVYFDAFH AVLVDVSVHVTLLQSGHYRKVRSDSSDSSAEGNDGINQDLVPVDLKEIALVKAFLMARDTLVEEMHKLSKAINQVIDLTEFRRKMNDIKMLDSVWQANLG TSDGEVSGQGKQQNGLETENAPVDCLSERLANPLSVDELTNIFQTLGAQQSYLWGVFMQFHRENKVHILEFLRDGWSKNRRVEWSIWMVYSKVDMPHHYI SSGNDEPSHSVPRRVAALWKLAIDPAQAAAARAELHRRSIAQMRINTCSIQDLYIFGDPLRIPIVNIERVINAPRRTMSENSYFKNMDMINSHCLGLEPN FEAGDKALHPTIQPTGRDLKIVVFVHGFQGHHLDLRLVRNQWLLIDSKIEFLMSQANEEKTSGDFREMGQRLAQEVVAFIKKKMDKVSRSGHLRDIKISF AGHSIGNVIIRSALSEVVMEPYLRYLYTYVSVSGPHLGYLYSSNSLFNSGMWLLKKLKGTQCIHQLTFTDDPDLRNTFFYQLCQHKTLDHFKNIILMSSP QDGYVPYHSARIELCQAATLDHSKRGKVFLEMLNNCLDQIRTSTTEQRLFMRCDVNFDTTVYGKNFNTFIGRAAHIEFLESDVFAKFIMWSFPELFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	0	1
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	2.6	0.8945
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	2.8	0.8761
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	4.9	0.8705
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	7.9	0.7724
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	8.5	0.8178
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	10.4	0.8633
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	13.0	0.7941
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	14.5	0.8165
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	14.8	0.7991
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	15.3	0.8013

Compare expression of checked genes

Lus10038351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.