Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18820 739 / 0 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT2G28000 635 / 0 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G55490 441 / 2e-148 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 433 / 1e-145 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 430 / 3e-144 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G26230 376 / 4e-123 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G23990 374 / 7e-123 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 367 / 4e-120 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 366 / 8e-120 HSP60-3A heat shock protein 60-3A (.1) AT3G18190 54 / 3e-07 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036216 [exp] 1079 / 0 AT5G18820 771 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 623 / 0 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10041329 [exp] 536 / 0 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10013404 [exp] 440 / 5e-148 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 440 / 3e-147 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10022832 [exp] 393 / 3e-130 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 392 / 8e-130 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 390 / 4e-129 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 379 / 2e-123 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122800 [exp] 828 / 0 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 648 / 0 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.015G123600 [exp] 645 / 0 AT5G18820 641 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 643 / 0 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.015G123200 [exp] 533 / 0 AT5G18820 552 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 437 / 1e-146 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 431 / 2e-144 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 402 / 2e-133 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.003G173900 [exp] 393 / 3e-130 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 390 / 5e-129 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10038352 pacid=23158221 polypeptide=Lus10038352 locus=Lus10038352.g ID=Lus10038352.BGIv1.0 annot-version=v1.0 ATGCCTCCCTCCGCCACCTCCCTCTTAAAGCCACTCTTCCCCGTTCTGGATGCACAAACTACTACATCTCCCTTCTTTACACCATCTCCCTGGAGGAATC CAAAGATGGTGAGGAGGAAATTGACGGTGAGAGCTTGCGGGAAGAAGATATCTTATGGGAAACACTGCAGAGAGGGCATGCTAGCTGGAATCGATAAGCT CGCTGATGCTGTCTCTGTCACACTAGGTCCCAGGGGTAGAAACGTTGTTCTTTCTGAATCTGATGGGTCGCTTAAGGTGGTGAATGATGGGGTTACGATT GCCAAGTCGATACAATTCTCGGATACGATGGAGAATGTCGGTGCTACGCTAATCCAAGAGGTTGCTGGCAAAGTGAATGCTTTGGCTGGTGATGGCACGA CAACTGCGATAATTTTGGCTCGTTCCATGATCAAGTTCGGCATGCTAGCAGTTGGTTTCGGTGCCAGTCCGATTTCTTTGAAGAGTGGAATTGATGCCAC AGTAAAAGAGCTGATCAAAATCTTGAAGGAGCATAGCTATCCAGTTAATGGGAGGGAAGACATTAAAGCCATTGCCTCGATATCTGCCGGAAACGACGAG TTTGTTGGCAACTTAATTGCTGACACTATTGAGAAAATTGGCCCCGACGGAGTTATCTCCCTCGAAACATCTCAGACTTCCGAAACCATTGTGACGATTG ATGAAGGGATGAAGGTAGACAGGGGTTATATGTCACCTCATTTCATCACTAATCAGGAGAAGTCTCTGGTAGAATTTGACAATGCGAAAGTTCTTGTAAC AGACCAGAGAATCGACACTGTCCAAGAACTGATTCCCGTCTTAGAAAAGACTACTCAACTTAGCGTCCCGCTGCTAATCTTTGCAGAGCACATCTCGAAG CAAGTATTGGAAACACTGGTGGTCAACAAGATCCAAGGTTTACTAAATGTTGCAGTTGTGAAGTGTCCTGGCATTTTAGACGGGAAGAAAGCTATCCTGC AAGATATTGCCCTAATGACAGGTGCTGATTTTCTTTCTGGCGATCTCGGTCAGTCGCTTATGGGTGTAACCTCAGATCAGCTTGGCATTGCACGGAAGAT TACCATAACAAGCAATTCAACAACCATAGTTGCGGATCCTTCAATGAAACCCGAAATTCAAGCGAGAATTCTCGAGCTGAAGAAGAATCTTGCTGAAACA GACAACTTACATTCTTCCAGAAAGCTGTCCGCTAGAATAGCTAAACTATCAGGCGGTGTTGCTGTGATCAAGGTTGGGGCACACACGGAAACAGAACTCG AAGAGAAGAAGCTGAGACTTGAAGATGCAAAGAACGCAACTTTTGCTGCCATGGACGAAGGAATTGTTCCTGGTGGTGGTGCAGCGTATGTGCATCTTTC GAAGCATGTTTTCGCCATAAAGAGTTCCATGTTGGATGAAAATGAGCAGATTGGCGCTGATATTGTAACAAAGGCACTTCTTGCACCTTCAAAAGCTATT GCAGCAAATGCAGGAGTCGACGGTGAAGTTGTGGTGGAAAAGATTCGAGCTTGTGATTGCCGAATCGGATACAACGCCATGACCGATACCTACGAAGATC TTCTAAATGCCGGGGTAGCAGACCCGTGTAAGGTATCGAGGTGTGCTCTTGAAACGGCAGCTTCAATTGCTGGGATAGTTCTTACAACTGAAGCTGCATT AGTTGAGAAAGTGAAAAAGCCCGAGCCAGCTTTTCCTGCACTTCCAGGAGTTACACCGTGA
AA sequence Show only first row Show all	>Lus10038352 pacid=23158221 polypeptide=Lus10038352 locus=Lus10038352.g ID=Lus10038352.BGIv1.0 annot-version=v1.0 MPPSATSLLKPLFPVLDAQTTTSPFFTPSPWRNPKMVRRKLTVRACGKKISYGKHCREGMLAGIDKLADAVSVTLGPRGRNVVLSESDGSLKVVNDGVTI AKSIQFSDTMENVGATLIQEVAGKVNALAGDGTTTAIILARSMIKFGMLAVGFGASPISLKSGIDATVKELIKILKEHSYPVNGREDIKAIASISAGNDE FVGNLIADTIEKIGPDGVISLETSQTSETIVTIDEGMKVDRGYMSPHFITNQEKSLVEFDNAKVLVTDQRIDTVQELIPVLEKTTQLSVPLLIFAEHISK QVLETLVVNKIQGLLNVAVVKCPGILDGKKAILQDIALMTGADFLSGDLGQSLMGVTSDQLGIARKITITSNSTTIVADPSMKPEIQARILELKKNLAET DNLHSSRKLSARIAKLSGGVAVIKVGAHTETELEEKKLRLEDAKNATFAAMDEGIVPGGGAAYVHLSKHVFAIKSSMLDENEQIGADIVTKALLAPSKAI AANAGVDGEVVVEKIRACDCRIGYNAMTDTYEDLLNAGVADPCKVSRCALETAASIAGIVLTTEAALVEKVKKPEPAFPALPGVTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	1.0	0.8911
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	3.2	0.8902
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	6.3	0.8282
AT2G24990			Serine/threonine-protein kinas...		Lus10017927 [exp]	6.3	0.7765
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	9.6	0.8544
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	12.0	0.7992
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	15.7	0.8332
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	18.3	0.8101
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	18.5	0.7708
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	19.2	0.8179

Compare expression of checked genes

Lus10038352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.