Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35110 1744 / 0 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036217 [exp] 2041 / 0 AT2G35110 2277 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10036218 [exp] 49 / 1e-06 AT1G31170 65 / 2e-14 sulfiredoxin (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G124400 [exp] 1836 / 0 AT2G35110 2305 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124500 [exp] 1772 / 0 AT2G35110 2139 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123900 [exp] 593 / 0 AT2G35110 807 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124200 [exp] 133 / 9e-36 AT2G35110 87 / 2e-20 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123001 [exp] 96 / 3e-23 AT2G35110 98 / 7e-25 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09735 [flax] [poplar] Nckap1 Membrane-associated apoptosis protein
Representative CDS sequence Show only first row Show all	>Lus10038353 pacid=23158504 polypeptide=Lus10038353 locus=Lus10038353.g ID=Lus10038353.BGIv1.0 annot-version=v1.0 ATGGCCAAGTCACATCAGCAATTCTCGTCCCGTGATTCATTAATGTCACCCACTGCTGAAAGATCGAAGGAGTGGGAGGGTCCAGCAAGATGGACTGAAT ACTTGGGTCCTGATATGACATCCTCAGTGGTGTCAAGGTCCTCAAGGTTTAAGGGTTCAGATGGACATCATCAGGGTTCGGGTGCCTCACATAAGGGTTT AAACTTGCAGTGGGTAGTCCAACTGACGGAAGTGGCTGAAGGCCTGATGTCCAAAATGTACAGGTTAAATCAAATATTGGACTATCCAGATCCGATTTCT CATTCGTTTTCAGAAAGTTTCTGGAAGGCGGGCATATTCCCTAACCATCCCAGGATGTGCACATTGCTATCCAAAAAGTTTCCTGATCATTTTAGCAAAC TACAACTTGAACGGGTTGACAAGCTGGCTTTGGATTCCTTGAATGATAACGCAGAAGTTCATTTGCAGAGCTTGGATCCGTGGATTCAGCACAGCATTTT GCAGCCCCATCAGAATTCACTTATACTGCATGCATTTATGGATCTCTTCTGCTCCTTTGTCCGTGTAAATCTTTTCTCTGAGAAGATACCCAGGAAAATG ATGTTGCAAGTGTATAACCTTCTCCATGCGATATCAAGAAATGACAGAGACTGTGATTTTTATCATCGGTTGGTCCAATTCATAGACTCTTATGACCCAC CTTTGAAAGGGCTACAAGAAGATCTAAATTTTGTAAGCCCACGTATTGGAGAGAGAGCCCAAGATTTAGCTAATGTTACATCTTATCGGGAATGGGTGCT ACTTGGATATCTAGTCTGTCCGGATGAACTTCTTCGAGTGACGAGCATTGACATCGCCCAGGTCGTTCTGAAAGAAAATTTGATTCTTACAGTATTCCGC GATGAGGTGAGAGCCAATCATGCGAAATCCAAAAAGATGGCAAAATCTGGACGCTCCAAACAAAAGGAAGCAGATCTGGAGTACAGTGTGGCTAAACAAG TTGAAAAGATGATAAGCGAAGTCCATGATCAGGCTCTCTTATCATGCGATGTCATCCATCGTGAAAGGAGAATATTGTTAAAGCAGGAAATCGGAAGAAT GGTTATGTTTTTCACTGATCAGCCAAGCTTATTGGCACCCAACATCCAGATGGTCTTTTCTGCTCTGGCGTTGGCTCAATCTGAGGTGATCTGGTACTTT CAACATGTAGGAATTGCATCATCAAAATCTAAAGCTGCTCGAACAGTTGCAGTTGACTTAGACCCTAGTGATCCAACTATTGGCTACTTATTAGATGGAA TGGATCGGCTATGCTGTCTAGTACGCAAGTATATTGCAGCTATTCGAGGCTATGCATTGTCGTATCTTTCTTCTTGTGCTGGTCGCATCCGGTTTCTGTT GGGAACTCCCGGAATGGTGGCTCTTGACCTTGATGCCACCTTGAAAGGACTGTTTCAGCATATCGTTCATCACCTTGAAAATCTACCCAAGACACAAGGT GAAAATGCCACTACTTGTGATTTATCGGAGTTCCGCAAGGATTGGCTGTCAATATTGATGATTGTGACATCAGCAAGATCATCAATAACCATAAGACACT TGGAAAAAGCAACTGTTTCCACGGGGAAGGAAGGGTTACTATCAGAAGGAAATGCAGCCTATAATTGGTCTAGGTGCGTAGATGAACTTGAGTCCCAACT GTCTAAGCATGGAAGTCTGAAAAAGCTTTATTTTTATCATCAACACCTCACTGCGGTTTTCAGGAACACCATGTTTGGACCTGAAGGTCGCCCTCAGCAT TGTTGTGCATGGCTTGGTGTGGCTAGTAGTTTTCCGGAATGTGCTTCACCGATTGTTGCGGAGGAGGTGACAAAAATTGGGCGTGATGCTGTACTATATG TTGAATCTCTGATTGAATCTATTATGGGGGGATTGGAAGGATTGATGAATATTCTTGACTCGGAAGGGGGTTTCGGTGCTTTGGAGGCTCAGCTTCTTCC AGAGCAAGCAGCTCTCTACTTGAACAATGCATTGAGAGTATCCATTGCTTCGTCAAAGTCACCCAAGGGGGTTGGTGGCTTTGCTTTGCCTGGCCATGAG AGCTATCCTGAAAATACTGGTTCTGTGAAGATGTTAGAAGCTGCAATGCAAAGGTTGACCAACTTATGCTCCGTTCTAAATGATATGGAGCCTATATGTG TTCTAAATCATGTTTTTGTTCTGAGGGAGTACATGAGAGAGTGCATTCTAGGAAACTTCAGGAGAAGATTGCTGACAGTACTGAAAACAGACAACGATCT TCAGCGTCCCTCGGTGCTCGAGTCGCTGATCCGTAGACACATGAGTATAATCCATCTAGCAGAGCACCACATTAGCATGGACCTGTCGCATGGTATGCGA GAAGCTCTCTTGACAGAGGCTTTCTGCGGACCAGTATCCTCTTTGCATTTGTTTGAGAAACCTGCGGAGGAGCTTTCCGGATCCGCCACTGAAATTGTGT GCAATTGGTACATCGAAAATATTGTCAAAGATGTGTCAGGTGCCGGGATCCTCTTCACACCCAAGCATGAATGCTTCAAAAGCACAAGGCCAGTCGGTGG ATATTTTGCTGAATCAGTTACTGATCTCAGAGAATTGCAGGCCTTTGTACATATATTTGGTGGTTATGGAGTTGATAGACTTGACAGATTGATGAAAGAG CACACAGCTGCCCTCTTGAATTGTATTGATACATCGCTGAGGTCAAATCGCGAGTTGCTAGAGTCTATTGCTGGAAGCATGCATTCTGGCGACCGGATAG AAAGAGAGACGTGCTCGAAGCAGATTCTAGACTTGGACACTGTAATTGGATTCTGCATAGAAGCAGGGCAAGCACTTGCATTTGATGAGCTTCTAGCTGA AGCTGCAGGTCTTGTGCTTAAAGAAGGTGCACCATTGATTCATTCTCTAGTCACAGGAGTGATAAAGCACATACCTGAAGAAATACCAGAAAGGAAAGAT ATCAGACGGATAAGAGGTGTGGCTAACAGTGTTGGTATAGGCGGTGATCATGATTCTGAATGGGTAAGATCAATATTGGAAGAGGTTGGTGGTGCCAATG ATGCTTCATGGACCTTGCTGCCGTACTTATTTGCCACCTTCATGACATCAAACATTTGGTCTCATCTTGTGGCGAAGCTCATTTTCCTGGACCAGCTTTG CGAGATCTCACCATACCTTCCTCGGAGCTCCCTCGAAGCCTACATACCATACACGATTCTCAGGTCAATCTACAGCCAGTACTACTCAAACTCACCATCT ATGCCACTTGCTCTGCTCAACACTGCATCGCCTCGCCAGTCACCCGCTGTGCCATCAGGACACAGTTCCCCAGGCATCCGCCAGCATCGTGGGGACTCAA CACCTCAGTACGGTGTCAACGATACCTCTGGCTACTTCAAGGGATCTTCTTCATCCTACAGCCAGGAGCACATATACAATACTGACAGTGGAAGCATGAG AGGCAACAACAATGACAACAAAGCTAGAAATGTGCGGCGGTCTGGACCACTGGATTACAACTCAAGTCGGAAACTGAAACACACTGAAGGGTCTTCGGGT TCGGCGAGCACAGGTCCGAGCCCAGTGCAGAGGTTTGCAGCGTCGAGGTCTGGTCCTTTGATGTACAAGTAG
AA sequence Show only first row Show all	>Lus10038353 pacid=23158504 polypeptide=Lus10038353 locus=Lus10038353.g ID=Lus10038353.BGIv1.0 annot-version=v1.0 MAKSHQQFSSRDSLMSPTAERSKEWEGPARWTEYLGPDMTSSVVSRSSRFKGSDGHHQGSGASHKGLNLQWVVQLTEVAEGLMSKMYRLNQILDYPDPIS HSFSESFWKAGIFPNHPRMCTLLSKKFPDHFSKLQLERVDKLALDSLNDNAEVHLQSLDPWIQHSILQPHQNSLILHAFMDLFCSFVRVNLFSEKIPRKM MLQVYNLLHAISRNDRDCDFYHRLVQFIDSYDPPLKGLQEDLNFVSPRIGERAQDLANVTSYREWVLLGYLVCPDELLRVTSIDIAQVVLKENLILTVFR DEVRANHAKSKKMAKSGRSKQKEADLEYSVAKQVEKMISEVHDQALLSCDVIHRERRILLKQEIGRMVMFFTDQPSLLAPNIQMVFSALALAQSEVIWYF QHVGIASSKSKAARTVAVDLDPSDPTIGYLLDGMDRLCCLVRKYIAAIRGYALSYLSSCAGRIRFLLGTPGMVALDLDATLKGLFQHIVHHLENLPKTQG ENATTCDLSEFRKDWLSILMIVTSARSSITIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESQLSKHGSLKKLYFYHQHLTAVFRNTMFGPEGRPQH CCAWLGVASSFPECASPIVAEEVTKIGRDAVLYVESLIESIMGGLEGLMNILDSEGGFGALEAQLLPEQAALYLNNALRVSIASSKSPKGVGGFALPGHE SYPENTGSVKMLEAAMQRLTNLCSVLNDMEPICVLNHVFVLREYMRECILGNFRRRLLTVLKTDNDLQRPSVLESLIRRHMSIIHLAEHHISMDLSHGMR EALLTEAFCGPVSSLHLFEKPAEELSGSATEIVCNWYIENIVKDVSGAGILFTPKHECFKSTRPVGGYFAESVTDLRELQAFVHIFGGYGVDRLDRLMKE HTAALLNCIDTSLRSNRELLESIAGSMHSGDRIERETCSKQILDLDTVIGFCIEAGQALAFDELLAEAAGLVLKEGAPLIHSLVTGVIKHIPEEIPERKD IRRIRGVANSVGIGGDHDSEWVRSILEEVGGANDASWTLLPYLFATFMTSNIWSHLVAKLIFLDQLCEISPYLPRSSLEAYIPYTILRSIYSQYYSNSPS MPLALLNTASPRQSPAVPSGHSSPGIRQHRGDSTPQYGVNDTSGYFKGSSSSYSQEHIYNTDSGSMRGNNNDNKARNVRRSGPLDYNSSRKLKHTEGSSG SASTGPSPVQRFAASRSGPLMYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	0	1
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	1.0	0.9823
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	3.7	0.9522
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	4.2	0.9148
AT5G65950			unknown protein		Lus10037422 [exp]	4.5	0.9398
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	6.9	0.9406
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	8.0	0.9311
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	9.5	0.9373
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	9.5	0.9365
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	9.7	0.8848
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	10.6	0.9172

Compare expression of checked genes

Lus10038353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.