Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35100 605 / 0 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 555 / 0 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G67410 316 / 4e-104 Exostosin family protein (.1) AT3G45400 273 / 7e-87 exostosin family protein (.1) AT1G74680 264 / 1e-83 Exostosin family protein (.1) AT1G34270 248 / 5e-77 Exostosin family protein (.1) AT5G16890 237 / 1e-72 Exostosin family protein (.1) AT3G03650 234 / 2e-71 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT5G61840 100 / 6e-23 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 97 / 1e-21 ATGUT1, IRX10, GUT2 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036219 [exp] 902 / 0 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 274 / 1e-87 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 275 / 2e-87 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10037016 [exp] 273 / 4e-87 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10031610 [exp] 261 / 4e-82 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10005684 [exp] 263 / 1e-81 AT3G45400 619 / 0.0 exostosin family protein (.1) Lus10020308 [exp] 260 / 1e-81 AT3G45400 622 / 0.0 exostosin family protein (.1) Lus10033734 [exp] 253 / 5e-79 AT1G34270 684 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 252 / 1e-78 AT1G74680 537 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G124800 [exp] 678 / 0 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.012G124600 [exp] 654 / 0 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 283 / 3e-91 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 270 / 1e-85 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.013G067400 [exp] 270 / 2e-85 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.013G116200 [exp] 258 / 6e-81 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 253 / 3e-79 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.002G210000 [exp] 252 / 1e-78 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 242 / 1e-74 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.005G055000 [exp] 93 / 4e-23 AT3G45400 145 / 5e-43 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10038355 pacid=23158415 polypeptide=Lus10038355 locus=Lus10038355.g ID=Lus10038355.BGIv1.0 annot-version=v1.0 ATGGCGCGTAAATCCTACTTCGTCAGACAAACAATCATCTGCTCCGCCTGCTTCGTCTTCGCTCTCTACGCCGTCTTCAACACCTTCCTCAACCCGGCCA CTCCTGCTCCCCCGCTCTTCCCCGACGGAGTGGTCCGCACTGAAGCCTTCTCAGTCGACGAGGACAAGAGAGTAAAGGTTTTCATGTACGATCTCCCCAG GGAGTTCACCTTCGGAATCATCGACGGCCACGCTAGGGCTCGTGGCTCGTCTGATTTGTCTCAGGTGAGGTACCCTGGCCACCAGCATATGGGGGAGTGG TACTTGTTTGCTGATCTGAATCGGACCGAGGAGGAGCGGGTCGGGTCGCCTGTGATTAGGGTGTATGATCCTGATGAGGCTGAGCTGTTTTACGTCCCCG TGTTCTCTTCCCTGAGCTTGATCGTTAACACGAATCGCCCGGGAGCTCCGGATCCGGGGTACAGCGACGAGAGGATGCAGGACGAGCTTGTGCAGTGGCT TGAGCAGAAGGAGTACTGGCGGAGGAACAGTGGGAGGGATCACGTCATTGTTGCCGGAGATCCCAATGCGCTTTACCGAGTCCTCGATCACGTCAAGAAC TCGGTGCTCCTGCTATCGGATTTCGGCAGGGTCAGATCTGATCAGGGATCGCTGGTGAAGGACTTGATCGTGCCGTATGCTCACCGGATTAATAGCTACA CAGGAGAAATTGGAGTGGGGAATCGTAACACTCTGCTCTTTTTCATGGGCAATCGTTACAGGAAAGACGGAGGCAGAATTCGAGACTTGTTTTTCCAGAT GCTGGAAACTGAGAACGACGTGATTATCAAACACGGAACTCAGTCGAGGGAGAATCGCCGGGCGGCCACTCGAGGGATGCACACTTCCAAGTTCTGTTTG AATCCGGCCGGAGATACTCCGTCAGCATGCAGACTGTTCGATTCGATTGTTAGCTTGTGTGTTCCGGTGATCGTGAGTGACAGCATTGAGTTACCTTTCG AAGATGTGATAGACTACAGAAAGATTGCAATCTTCGTGGGGACTAAAGCTTCTCTTAAGCCTGGATACTTGGTTAATTTGCTTAAAGGTGTAAGCACAGA GAGGATCCTGGAGTTCCAAAAGGAGCTGAAAAGGGTAAGCCACTACTTCGAGTACGGGGAACCAAACGGAGCAGTGAATGAGATATGGCGTCAAGTTACG CAGAAGCTACCCCTGATAAAACTGATGATAAACCGTGATAAACGGGTGATCAATAGGGACTCGAACGAACCAGACTGTTCTTGCCTGTGTACTAACCAGA CCGGCATTGTAAGCTCCTTATAG
AA sequence Show only first row Show all	>Lus10038355 pacid=23158415 polypeptide=Lus10038355 locus=Lus10038355.g ID=Lus10038355.BGIv1.0 annot-version=v1.0 MARKSYFVRQTIICSACFVFALYAVFNTFLNPATPAPPLFPDGVVRTEAFSVDEDKRVKVFMYDLPREFTFGIIDGHARARGSSDLSQVRYPGHQHMGEW YLFADLNRTEEERVGSPVIRVYDPDEAELFYVPVFSSLSLIVNTNRPGAPDPGYSDERMQDELVQWLEQKEYWRRNSGRDHVIVAGDPNALYRVLDHVKN SVLLLSDFGRVRSDQGSLVKDLIVPYAHRINSYTGEIGVGNRNTLLFFMGNRYRKDGGRIRDLFFQMLETENDVIIKHGTQSRENRRAATRGMHTSKFCL NPAGDTPSACRLFDSIVSLCVPVIVSDSIELPFEDVIDYRKIAIFVGTKASLKPGYLVNLLKGVSTERILEFQKELKRVSHYFEYGEPNGAVNEIWRQVT QKLPLIKLMINRDKRVINRDSNEPDCSCLCTNQTGIVSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	0	1
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	1.0	0.9362
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	2.4	0.8927
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	3.5	0.8812
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	5.5	0.8950
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	7.5	0.8600
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	9.2	0.8805
AT1G34270			Exostosin family protein (.1)		Lus10031610 [exp]	9.8	0.8368
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	9.8	0.8699
AT4G28600		NPGR2	no pollen germination related ...		Lus10022897 [exp]	9.9	0.8270
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	11.5	0.8645

Compare expression of checked genes

Lus10038355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.