Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48890 172 / 2e-54 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 162 / 2e-50 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT2G24940 79 / 3e-19 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT4G14965 61 / 2e-11 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005746 [exp] 152 / 3e-46 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 152 / 3e-46 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 143 / 5e-43 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 140 / 7e-42 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10002241 [exp] 79 / 2e-19 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 79 / 4e-17 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10018026 [exp] 62 / 1e-11 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10034799 [exp] 53 / 1e-09 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10042022 [exp] 52 / 3e-08 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125100 [exp] 200 / 7e-66 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 163 / 5e-51 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.012G137800 [exp] 160 / 5e-50 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.006G266200 [exp] 83 / 7e-21 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.018G016900 [exp] 81 / 3e-20 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.016G022700 [exp] 56 / 1e-09 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10038356 pacid=23158227 polypeptide=Lus10038356 locus=Lus10038356.g ID=Lus10038356.BGIv1.0 annot-version=v1.0 ATGGAGCTTTTCGCAGTTCTGTTCGATACCATTGATGCCTACACGGGACTCTCTCCAACGGCGTTCTTCACAATCCTAGCACTTTCGCTGCTCGTTTACA AAATCGTCTGCGGCTTCTTCGTCGGACCAGAGGAGTTCAACAAGCCCCCCGCCGCTGCCGTAGTACCCCCTAACCTAACCAATCCTCCGCCGATTCTCGA ACCTGTCCAGCTCGGAGACGTCACCGAGCAAGAGCTCCGAGCTTACAACGGTTCCGATCCCAGCAAGCCCCTTCTTATGGCAATCAAGGGCCAGATCTAC GACGTTTCCCGTTCCAGGATGTTTTACGGGCCAGGAGGACCGTACAGGATATTTGCCGGGAGGGAAGCAGCGAGAGCTCTTGCTCTCTTATCGTTTGACC CTCAGGATTTGACGGCTGATCTGGAAGGGCTGAGTGAATCTGAGCTTGAAGTTCTTCAGGACTGGGAATATAAGTTCATTGAGAAATATGTCAAGGTTGG CCAGATTGTTTCCAGTAAAGCTGTTGGAGATAGTCCAAAGCTTCAAGAAGTGAAGAAGGATCAGTAG
AA sequence Show only first row Show all	>Lus10038356 pacid=23158227 polypeptide=Lus10038356 locus=Lus10038356.g ID=Lus10038356.BGIv1.0 annot-version=v1.0 MELFAVLFDTIDAYTGLSPTAFFTILALSLLVYKIVCGFFVGPEEFNKPPAAAVVPPNLTNPPPILEPVQLGDVTEQELRAYNGSDPSKPLLMAIKGQIY DVSRSRMFYGPGGPYRIFAGREAARALALLSFDPQDLTADLEGLSESELEVLQDWEYKFIEKYVKVGQIVSSKAVGDSPKLQEVKKDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	0	1
AT1G65720			unknown protein		Lus10031363 [exp]	1.4	0.9501
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	3.0	0.9095
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	3.7	0.9007
AT5G67020			unknown protein		Lus10019345 [exp]	4.0	0.9147
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	5.4	0.8727
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	6.0	0.8860
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	8.2	0.8862
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	9.1	0.8431
AT5G44060			unknown protein		Lus10011797 [exp]	9.2	0.8740
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	10.0	0.9074

Compare expression of checked genes

Lus10038356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.