Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54070 356 / 4e-114 Ankyrin repeat family protein (.1) AT3G18670 355 / 3e-113 Ankyrin repeat family protein (.1) AT5G35810 288 / 5e-91 Ankyrin repeat family protein (.1) AT5G04700 288 / 3e-87 Ankyrin repeat family protein (.1) AT5G04690 282 / 2e-85 Ankyrin repeat family protein (.1) AT5G04680 245 / 4e-71 Ankyrin repeat family protein (.1) AT5G04730 224 / 3e-64 Ankyrin-repeat containing protein (.1) AT5G35830 142 / 6e-38 Ankyrin repeat family protein (.1) AT4G03500 79 / 5e-15 Ankyrin repeat family protein (.1) AT4G03460 79 / 8e-15 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027721 [exp] 405 / 1e-132 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10019887 [exp] 328 / 6e-101 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10035567 [exp] 231 / 3e-68 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014030 [exp] 226 / 2e-63 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10003282 [exp] 165 / 2e-42 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 158 / 7e-40 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10000489 [exp] 149 / 6e-38 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014701 [exp] 150 / 1e-37 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10014031 [exp] 125 / 7e-34 ND 146 / 2e-42
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125000 [exp] 614 / 0 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 500 / 1e-169 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 499 / 2e-168 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 416 / 4e-136 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.007G110000 [exp] 397 / 9e-129 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 356 / 5e-112 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 350 / 2e-109 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 343 / 4e-107 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 329 / 5e-103 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 275 / 2e-84 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038357 pacid=23158133 polypeptide=Lus10038357 locus=Lus10038357.g ID=Lus10038357.BGIv1.0 annot-version=v1.0 ATGAGCTCAAGAAAGACCGATTCGTCTCGAATGGGGAGGAGCCCCTCCATCAAGTCATGCTTCCCCGATACGAAATCAACCGAAGGTTCCGATTACAGAT CCGAACTCAGGTCATCAGTACATCACCTCAAGTCATATTCATGTGACGTTAGGGACCTCAATTTCTCCCCCATGTCGCCGGCGCAGGCTGCTGAACACCA CTCCTCAAATCTAGTCATGTACGACAATGCACTCTACTCCAATCCCACCCCGAACCGGGACCATTTAGGTGGTTCCCCTTTCTCCGGTGGTGTAAGACGG AGCTTTGACATTCAGAACCAGTTTCCTCGTGCTTCCCCTGCTCGCAACTCGGAAGGATATAAGGTGGCCACCTTTGCCCCTGTACTCACATTGCAGGCAT CTAATGAGAACTCGGCTCTCGACACTGCTCCATCCAACATGAGCTGTTCCCCCTTGGTGGAAGGTGCCAAGTTAGTTGAACTCTTGGCTGGGCCAGGGGA CAAAAGATTCAAAGGCCATCCTAGACATGTTCCGCTCTATCTCGCTGCACTTAAAGGAGATTGGCGAACAGCTAAGTCATACCTGCAATGGCACCCTACC GCAATCCGAGCTTACATCACAAGGGGCCTGGAAACTGCACTTCACATTGCTGCGGGAGCAAGGCATACGGTGTTTGTTCGAAAGCTGGTTAAGAAGATGT CGCCTGATGATCTAGCTCTCCAGAACAAGGTCGGGAATACAGCCCTGTGTTTCGCTGCAGTCTCGGGTCTGACTGAGATAGCAAAAGTGTTAGTGAACAA GAACAGGAAGTTGCCACTTGTTAGAGGCAGTAAAGGAGCAACGCCTCTCTATATGGCTGTGCTTCTCGGGAAAAGAGACATGGTTTGGTACCTTTACTCT GTCACAGATGACAATGACTTCTCCGCAGAGGATCGGATCGGGCTTCTTGTCGCTGCCATCACATCTGACCTATTTGATGTTGCTTTGGCATTGCTTCGTA ACCATCCGGAGCTAGCTACAGCTCGAGACGCGAATGGCGAATCTGCCCTTCATGTGTTGTCCAGAAAGCCTGGTGCATTTTATAGTGGAACCCAATTGAG CCTTTGGAAGAGATGCATCTATAAATTACCAGATGCTAATCTAATATACTACATGAAGTTGAGCCATTATCAAGCCCTTGAGCTGGCCAAGAGACTCTGG GACCTGATACTGCAACTAGATAATGCAAGCCTTAAAGAATTCATCAGAACTCCCACCCGGTTACTTTTCACAGCTACTGAGTTGGGAATGGTAGAGTTTG TGACCGTCTTGATCCGTTCATACCCTGACCTCATCTGGAAGGTTGATGAAAACTCTCGAAGCATATTCCATACGTCAGTGGTGCATCGGCAAGAAAAGGT CTTCAGCCTCATCAATGAGATAGGGGCACTCAAGGACTTCATAGCTATTTACAAGGACGAGGAGAACAATAACATGTTGCATTTGGCCGGAAAGCTTCCC CATCCGAGTCGGTTGAACTCGGACTCTGGTGCAGCTTTGCAGTTGCGACGTGAGATACTGTGGTTCAAGGAAGTGGAAAGGATCGTACAACCTCTGTATA CCGAGATGAAAAACGCAGATGGGAAGACTCCACACGATCTCTTCTCAACAGATCACAAGAAGCTAGCACGAGAAGGGGAGAAGTGGATGAAGGAAACTGC ATCTTCGTGCATGGTCGTCGCGACGCTCATCACCACCATGATGTTTGCAGCAGCATTCACTGTCCCTGGTGGGAACAACCAGGACACAGGCAGGCCACTG TTCATCAGAACCAAGTCCTTCTTGATCTTCGCCATATCCGATGCACTTGCTCTGGTCTCTTCTGCAACATCCATTTTGATATTCCTGTCCATACTGACCT CACGATACGCCGAGGAGGACTTCCTCTCCTCATTGCCGAACAAGCTCCTGACAGGGCTTCTGACACTCTTCATCTCCATCACCACCATGATGATGGCCTT CAGCACCACCCTTTTCATGACTCTTGGTTATGGTCATTCCTGGGCCAGTGTTTCCATCACAGCGGTTGCTTGTGTCCCTGTCTCGATCTATGCTCTCCTG CAATTTCGTCTTGTCGCCGACATCGTTAGTCATTCTTATACCTCCAGTATCTTCTTTCACCCAAACAACTGTTTGCTGGGCTAA
AA sequence Show only first row Show all	>Lus10038357 pacid=23158133 polypeptide=Lus10038357 locus=Lus10038357.g ID=Lus10038357.BGIv1.0 annot-version=v1.0 MSSRKTDSSRMGRSPSIKSCFPDTKSTEGSDYRSELRSSVHHLKSYSCDVRDLNFSPMSPAQAAEHHSSNLVMYDNALYSNPTPNRDHLGGSPFSGGVRR SFDIQNQFPRASPARNSEGYKVATFAPVLTLQASNENSALDTAPSNMSCSPLVEGAKLVELLAGPGDKRFKGHPRHVPLYLAALKGDWRTAKSYLQWHPT AIRAYITRGLETALHIAAGARHTVFVRKLVKKMSPDDLALQNKVGNTALCFAAVSGLTEIAKVLVNKNRKLPLVRGSKGATPLYMAVLLGKRDMVWYLYS VTDDNDFSAEDRIGLLVAAITSDLFDVALALLRNHPELATARDANGESALHVLSRKPGAFYSGTQLSLWKRCIYKLPDANLIYYMKLSHYQALELAKRLW DLILQLDNASLKEFIRTPTRLLFTATELGMVEFVTVLIRSYPDLIWKVDENSRSIFHTSVVHRQEKVFSLINEIGALKDFIAIYKDEENNNMLHLAGKLP HPSRLNSDSGAALQLRREILWFKEVERIVQPLYTEMKNADGKTPHDLFSTDHKKLAREGEKWMKETASSCMVVATLITTMMFAAAFTVPGGNNQDTGRPL FIRTKSFLIFAISDALALVSSATSILIFLSILTSRYAEEDFLSSLPNKLLTGLLTLFISITTMMMAFSTTLFMTLGYGHSWASVSITAVACVPVSIYALL QFRLVADIVSHSYTSSIFFHPNNCLLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	0	1
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	1.0	0.9440
AT2G22560			Kinase interacting (KIP1-like)...		Lus10002655 [exp]	2.0	0.9364
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	4.0	0.9394
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	5.3	0.9287
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	5.5	0.9364
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	5.7	0.9255
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	5.9	0.9354
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	6.0	0.9235
					Lus10007802 [exp]	6.0	0.9332
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	6.6	0.9190

Compare expression of checked genes

Lus10038357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.