Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31130 115 / 2e-32 unknown protein AT5G44860 112 / 3e-31 unknown protein AT4G19950 110 / 3e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017130 [exp] 122 / 1e-34 AT4G19950 410 / 1e-144 unknown protein Lus10018322 [exp] 119 / 2e-33 AT4G19950 417 / 3e-147 unknown protein Lus10028643 [exp] 66 / 1e-13 AT1G31130 228 / 1e-72 unknown protein Lus10018940 [exp] 62 / 2e-12 AT1G31130 231 / 8e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G125600 [exp] 130 / 3e-38 AT1G31130 327 / 7e-112 unknown protein Potri.012G125800 [exp] 125 / 2e-36 AT5G44860 396 / 4e-139 unknown protein Potri.005G186200 [exp] 69 / 5e-15 AT4G19950 185 / 3e-56 unknown protein Potri.007G105600 [exp] 68 / 1e-14 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 61 / 8e-12 AT4G19950 182 / 4e-55 unknown protein Potri.002G074200 [exp] 49 / 1e-07 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 48 / 3e-07 AT4G19950 133 / 3e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038358 pacid=23158194 polypeptide=Lus10038358 locus=Lus10038358.g ID=Lus10038358.BGIv1.0 annot-version=v1.0 ATGAAGAAGAGCTACGAGCTGCTCAAGGGGAAAACCAGAGCTGCTGCTGTGCTGGTGTTTGGTTACTTGGCGATCTGTGGAGTGATTGCTGGAGTCTTCG GATCGGTGGTGGTTCACGGCGGAGAAGGTCATGGAGTTTTCACTAGGATTGTCGTCGGTGGATTTCTGGTTGGGGTTTTGGTGATTGTGAACCTTGTGGG ATTGTTGGTTCAGAGCGTGTTCTACTATGTCTGCAAGAGCTACCATCACCAAGGGATTGATAAGATGGCTTTGCACGATCAGCTAGGTGGGTATCTTGGA GAGTACGTGCCTCTTAAGAGCAACATTCAGCTGGAGGACTTGGATGCTTGA
AA sequence Show only first row Show all	>Lus10038358 pacid=23158194 polypeptide=Lus10038358 locus=Lus10038358.g ID=Lus10038358.BGIv1.0 annot-version=v1.0 MKKSYELLKGKTRAAAVLVFGYLAICGVIAGVFGSVVVHGGEGHGVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYHHQGIDKMALHDQLGGYLG EYVPLKSNIQLEDLDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19950			unknown protein		Lus10038358 [exp]	0	1
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	1.4	0.9162
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	1.4	0.9166
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	2.0	0.9033
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	3.0	0.9126
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	3.9	0.8836
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	4.9	0.8791
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	5.7	0.8753
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	6.0	0.8615
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10038865 [exp]	6.3	0.8425
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	6.3	0.8639

Compare expression of checked genes

Lus10038358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.