Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44790 1405 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT1G63440 787 / 0 HMA5 heavy metal atpase 5 (.1) AT5G21930 326 / 6e-97 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 318 / 1e-93 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 253 / 2e-70 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 233 / 3e-63 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 166 / 4e-43 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 147 / 4e-36 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT2G41560 128 / 8e-30 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 123 / 2e-28 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036225 [exp] 1625 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 764 / 0 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10031273 [exp] 715 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10031840 [exp] 466 / 2e-149 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 301 / 3e-87 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10006955 [exp] 262 / 3e-73 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 261 / 5e-73 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10038070 [exp] 228 / 4e-62 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10011510 [exp] 161 / 4e-41 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075700 [exp] 1491 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 1467 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 806 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 803 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 755 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 753 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.018G047800 [exp] 336 / 7e-100 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G024000 [exp] 323 / 3e-95 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 305 / 7e-89 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G076900 [exp] 266 / 3e-74 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10038364 pacid=23158425 polypeptide=Lus10038364 locus=Lus10038364.g ID=Lus10038364.BGIv1.0 annot-version=v1.0 ATGTCGCCGAGCATCATAGACCTGCAGCTGACTCGAATCGGCGGCGGAAGCCACGCTGATACCGCCGATATGGAGGACGTCAGGCTCCTAGACTCCTACG AACATCGCGATGATTCCCATGCGATCGCCGTCGGAGAAGGAGAGGAAGGAGGAATGAGGACGATTCAGCTCAGAGTTACAGGGATGACCTGTGCTGCCTG CTCCAATTCCGTTGAATCAGCTGTCAGGGGGATCAACGGCGTTGTCTCCGCCTCCGTTGCCTTGCTCCAGAACAGGGCCGATGTCGTGTTTGACCCGAGC TTGGTCAAGGATGATGATGTCAAGAATGCAGTCGAAGATGCAGGATTCGATGCAGAGGTTCTGGCTCAGCCGACTATCAAGAAAAAGTCTAACAGTAAAA CCCTGGTGGGTCAATTCACAATCGGGGGTATGACTTGTGCAGCTTGCGTAAACTCGGTCGAAGGAATTTTGAAAGATCTTCCTGGTGTCAAGAGGGCAGT AGTGGCATTGGCTACTTCATTAGGAGAAGTTGAGTATGATCCCCATGTAATTAGTAAAAATGACATAGTGAATGCCATTGAAGATGCTGGCTTTGAAGGC TCACTTGTACAGAGCAGTCAGCAGGACAAACTCATAGTAGGTGTTACCGGAATCATGACTGAGATGGACGCACAACTTCTGGAAGGAATACTGAGTACAT CGAGAGGGGTAAGGCAATTTCGTTACAACAGGATATCCACCGAACTTGAAGTTCTCTTTGACCCTGAAGTTATTAGCTCTAGAGCCTTGGTTGATGGTGT GGAAGGAGGGAGCAATGGCCAGTTCAAATTACATGTTATCAATCCATTTGCAAGAATGACTTCGAAAGATAATGAAGAAGCCTCAACGATGTTTAGGCTT TTCATTTCCAGCTTGTTTTTTAGTATTCCCGTTTTTTTCATAAGAGTGATATGCCCTCACATACCCCTGCTATATTCTGTGTTACTCCGGCGTTGTGGGC CTTTCCTCATGGGTGATTGGTTGAAGTGGGCATTGGTGAGTGTGGTGCAGTTTGTGATTGGGAAGCGCTTCTATGTTGGAGCTGCAAGAGCACTTAAAAA TGGCTCCACCAATATGGATGTGCTAGAGCACGTAAAAATGGCTCCACCAATATGGATGTGCTGGTTGCACTGGGAACCACTGCCTCGTACGTCTACTCGG TTTGTGCTCTTCTATATGTATTTGGAGTGTCTTGCAAAGGGAAAAACATCTGATGCCATCAAAAAGTTAGTCGAACTTGCACCGGCAACTGCATTGTTGG TTTCCAAAGACAGAGACGGAAATATTCAGGAAAGGGAAATAGATGCCTTACTTATTCAGCCTGGTGATACTTTAAAAGTTGTTCCGGGTGCAAAAGTTCC GGCAGATGGTGAAGTTGTATGGGGTTCGAGTTATGTTAACGAGGGCATGGTAACTGGAGAAGCAGAACCAGTTCTTAAGGAGGCTAATTCATCAGTCATT GGTGGTACAATTAACTTGCATGGTGTGCTACATGTTAAAGCTACCAAAATTGGATCCGATGCTGTTTTAAGCCAGATAATTAGTTTGGTTGAAACGGCTC AGATGTCCAAAGCTCCAATTCAGAAATTTGCAGATTTTGTTGCTAGCATTTTTGTCCCTGTTGTTATCGCCATGGCTATGATTACATGGTTGGGTTGGTA CGTTGGTGGAACTATAGGAGCATATCCTGAACAGTGGCTTCCCGAACATGGAAATTTCTTTGTCTTCTCCCTCATGTTTTCGATATCAGTTGTGGTAATT GCATGCCCATGTGCACTTGGCTTGGCAACACCAACAGCGGTGATGGTTGCTACTGGAGTTGGAGCTAAACATGGTGTGTTAATAAAAGGAGGTGATGCTT TGGAAAGGGCTGAGAAGATTAAGTATGTGATATTCGATAAAACTGGAACTTTGACTCAGGGGAAAGCTACCGTTACCTCTGCAAAAGTCTTTACAGGAAT GGATCGTGGAGAATTCCTCAGATGGGTAGCTTCTGCAGAGGCTAGCAGTGAGCATCCACTGGCAAAAGCAATAGTCGAGTATGCGCGTCACTTCCATTTC TTTGATGGGCCTTCTCCAACAAAAGAGGGCGAAACCCATAAGAAAGACTCGGTAAACTCAGGTTGGCTGTTAGATGCCACAGATTTCTCTGCTCTTCCTG GAACAGGTGTCAAGTGCTACATACATGGAAAACGAGTTCTGGTGGGAAATCGGAAGCTCATGATGGAGAATGGAATTGGAATCGCAGCTCATGTAGAGGA CTTCCTGGTAGAACTTGAAGATTCTGCAAAGACAGGGATACTTGTTTCATTCGATGACGACTTGATTGGCGTACTTGGAGTTGCAGATCCGTTGAAGAGA GAGGCTGCTGTTGTCATAGAAGGCCTTAAAAAAATGGGTGTTGAACCGATCATGGTCACCGGTGACAATTGGCGGACTGCTCGTGCTGTAGCCAAAGAGG TAGGGATCACCGATGTAAGAGCTGAAGTAATGCCAGCAGGGAAAGCCGATGTTGTGCGCTCCTTTCAAAAGGACGGAAGCTTAGTTGCTATGGTTGGCGA CGGCATAAACGACTCCCCAGCTCTGGCGGCATCTGACGTCGGAATGGCCATTGGCGCCGGAACAGATATCGCAATTGAAGCTGCAGACTACGTGTTGATG AGAAACAACTTGGAGGACGTGATCACTGCAATCGATCTGTCGAGAAAGACATTTGCTCGAATCCGGCTGAACTACATATTTGCGATGGTGTACAATGTGG TGTCGATACCAATAGCTGCCGGAGTGTTCTTCCCTTATACGAGGCTGGAGCTCCCGCCATGGGCAGCCGGTGCATGCATGGCGCTTTCATCGGTAAGCGT GGTGTGCTCCTCTTTACTCTTGAGACTGTATACGAAACCCAGACTCACCACTTTACTGAAAATTACAGTAGAATAG
AA sequence Show only first row Show all	>Lus10038364 pacid=23158425 polypeptide=Lus10038364 locus=Lus10038364.g ID=Lus10038364.BGIv1.0 annot-version=v1.0 MSPSIIDLQLTRIGGGSHADTADMEDVRLLDSYEHRDDSHAIAVGEGEEGGMRTIQLRVTGMTCAACSNSVESAVRGINGVVSASVALLQNRADVVFDPS LVKDDDVKNAVEDAGFDAEVLAQPTIKKKSNSKTLVGQFTIGGMTCAACVNSVEGILKDLPGVKRAVVALATSLGEVEYDPHVISKNDIVNAIEDAGFEG SLVQSSQQDKLIVGVTGIMTEMDAQLLEGILSTSRGVRQFRYNRISTELEVLFDPEVISSRALVDGVEGGSNGQFKLHVINPFARMTSKDNEEASTMFRL FISSLFFSIPVFFIRVICPHIPLLYSVLLRRCGPFLMGDWLKWALVSVVQFVIGKRFYVGAARALKNGSTNMDVLEHVKMAPPIWMCWLHWEPLPRTSTR FVLFYMYLECLAKGKTSDAIKKLVELAPATALLVSKDRDGNIQEREIDALLIQPGDTLKVVPGAKVPADGEVVWGSSYVNEGMVTGEAEPVLKEANSSVI GGTINLHGVLHVKATKIGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPVVIAMAMITWLGWYVGGTIGAYPEQWLPEHGNFFVFSLMFSISVVVI ACPCALGLATPTAVMVATGVGAKHGVLIKGGDALERAEKIKYVIFDKTGTLTQGKATVTSAKVFTGMDRGEFLRWVASAEASSEHPLAKAIVEYARHFHF FDGPSPTKEGETHKKDSVNSGWLLDATDFSALPGTGVKCYIHGKRVLVGNRKLMMENGIGIAAHVEDFLVELEDSAKTGILVSFDDDLIGVLGVADPLKR EAAVVIEGLKKMGVEPIMVTGDNWRTARAVAKEVGITDVRAEVMPAGKADVVRSFQKDGSLVAMVGDGINDSPALAASDVGMAIGAGTDIAIEAADYVLM RNNLEDVITAIDLSRKTFARIRLNYIFAMVYNVVSIPIAAGVFFPYTRLELPPWAAGACMALSSVSVVCSSLLLRLYTKPRLTTLLKITVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	1.0	0.9368
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	2.0	0.9212
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	4.6	0.8887
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	4.7	0.8738
AT1G72300			Leucine-rich receptor-like pro...		Lus10019722 [exp]	11.0	0.8825
					Lus10035107 [exp]	14.5	0.8326
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	16.7	0.8843
AT4G02715			unknown protein		Lus10042605 [exp]	17.0	0.8354
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	17.6	0.8682
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	18.4	0.8673

Compare expression of checked genes

Lus10038364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.