Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31040 129 / 1e-36 PLATZ transcription factor family protein (.1) AT2G12646 108 / 7e-29 PLATZ transcription factor family protein (.1) AT3G60670 97 / 1e-24 PLATZ transcription factor family protein (.1) AT1G43000 84 / 1e-19 PLATZ transcription factor family protein (.1) AT1G32700 82 / 3e-19 PLATZ transcription factor family protein (.1.2) AT1G21000 82 / 9e-19 PLATZ transcription factor family protein (.1.2) AT4G17900 80 / 1e-18 PLATZ transcription factor family protein (.1.2) AT1G76590 81 / 4e-18 PLATZ transcription factor family protein (.1) AT2G27930 79 / 6e-18 PLATZ transcription factor family protein (.1) AT5G46710 75 / 3e-16 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036226 [exp] 219 / 1e-72 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 107 / 5e-28 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 101 / 6e-26 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 101 / 8e-26 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 100 / 2e-25 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 100 / 2e-25 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 100 / 5e-25 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10004577 [exp] 88 / 5e-21 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 87 / 1e-20 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159200 [exp] 148 / 3e-44 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 145 / 7e-43 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 112 / 2e-30 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 109 / 3e-29 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 98 / 1e-24 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 90 / 9e-22 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.013G078500 [exp] 86 / 4e-20 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 85 / 4e-20 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.001G141500 [exp] 85 / 7e-20 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.001G212400 [exp] 84 / 7e-20 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10038365 pacid=23158111 polypeptide=Lus10038365 locus=Lus10038365.g ID=Lus10038365.BGIv1.0 annot-version=v1.0 ATGGTTAGTTACTACTACAACTGTTCATCATCATCATCGGCGGCGGCGGCGGCAGAGGAAGAGAGGAGGAGGAGGAGGCCGCCGCCACCGCCGCCTGCAT GGCTGCAAGGGCTGATCGGGGTGAGGAGATATGTGTACCATGACGTGGTTCGACTGGAAGATCTCGAGAAGCTAATCGACTGCTCCTATATTCAGCCGTA CACAATAAACAGTGCAAAGGTGATATTTCTGAAGCAAAGACCACAGTCAAGGTCTGGCAAGGCCGCCTCCTCTGCCAGCTTCTGTTCCACTTGTGACAGA ATGCTCCAGCACAATTTCCATTTCTGCTCTCTCGCTTGCAAGGTGGATCGCATGGTGGAGGAAGGGGAGAACATGGGTTGCATCCCGTTGATGGGCGGCA GCGAATCGGAGGATATGACGATGATGACTAGTAGTAGTAGTGCTGCATTCTCGGGCTTCGACGAGATGGCTGACGATGAAGGTGGTGGTGGCCATCTCGA GCCGTCTTATAATTACGATATGGTGGAAGAAGCGGACACGTCGGGATCGGGTGGTGGTGAGAGGCAAAGGAGGAAGAAGAAGAAGAAAGAGGCGGCGGGG TTGATACAAGCTGGGATCAATGCGCTGTCGTTGAGCAGTAGAAGGAAAGGTGCTCCTCATAGGGCTCCTCTTTCTTAA
AA sequence Show only first row Show all	>Lus10038365 pacid=23158111 polypeptide=Lus10038365 locus=Lus10038365.g ID=Lus10038365.BGIv1.0 annot-version=v1.0 MVSYYYNCSSSSSAAAAAEEERRRRRPPPPPPAWLQGLIGVRRYVYHDVVRLEDLEKLIDCSYIQPYTINSAKVIFLKQRPQSRSGKAASSASFCSTCDR MLQHNFHFCSLACKVDRMVEEGENMGCIPLMGGSESEDMTMMTSSSSAAFSGFDEMADDEGGGGHLEPSYNYDMVEEADTSGSGGGERQRRKKKKKEAAG LIQAGINALSLSSRRKGAPHRAPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	0	1
					Lus10001007 [exp]	1.7	0.8361
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	1.7	0.7974
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10005019 [exp]	4.2	0.7585
AT4G18593			dual specificity protein phosp...		Lus10013913 [exp]	5.7	0.7392
AT2G35658			unknown protein		Lus10000594 [exp]	7.1	0.7079
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	8.2	0.7290
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	11.6	0.8038
AT5G13470			unknown protein		Lus10005318 [exp]	12.2	0.7219
AT5G66580			unknown protein		Lus10000739 [exp]	12.6	0.7408
					Lus10019329 [exp]	17.1	0.6936

Compare expression of checked genes

Lus10038365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.