Plant FIBer expression Database

Lus10038366 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31070 810 / 0 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
AT2G35020 800 / 0 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
AT5G52560 76 / 3e-14 ATUSP UDP-sugar pyrophosphorylase (.1)
AT5G46420 58 / 8e-09 16S rRNA processing protein RimM family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036227
[exp]
940 / 0 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
Lus10028658
[exp]
72 / 3e-13 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1)
Lus10000971
[exp]
69 / 4e-12 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1)
Lus10011969
[exp]
49 / 6e-06 AT5G46420 579 / 0.0 16S rRNA processing protein RimM family (.1)
Lus10004590
[exp]
44 / 0.0004 AT5G46420 587 / 0.0 16S rRNA processing protein RimM family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G074700
[exp]
801 / 0 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
Potri.001G159700
[exp]
783 / 0 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
Potri.002G077400
[exp]
75 / 3e-14 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Lus10038366 pacid=23158255 polypeptide=Lus10038366 locus=Lus10038366.g ID=Lus10038366.BGIv1.0 annot-version=v1.0
ATGATCGACGGCAACAGCAACGCCTCCTCCTCGCCATTGCCTCCTCCGCCTCAGGCCTTGCTCGAGCGCCTTAAGGACTACGGCCAGGAAGATGTGTTTT
CTCTCTGGGAAGAGCTCTCCGCCGATGAACGCGACTTCCTCGTCAAGGACATCGAGAGTCTAGATCTCCCGAGGCTGGATCGGATAATCCGATGCTCACT
TCAATCCCAAGCTCTGCCAGTAGCCGCCATTGAACCAGTACCAGAGGGCAGCGTATCTACTGTGGAGTCCAGGACGATGGAAGAGAAGGAGCGATGGTGG
AAGATGGGATTAAAAGCAATCTCTGGCGGGAAGTTGGCTGTTCTTCTTTTATCTGGCGGTCAGGGAACGCGGCTTGGAAGTGATGACCCAAAAGGATGTT
TCAACATCGGACTTCCATCTGGAAAGTCTCTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCCCAAAGATTAGCTGCTCATGAAGCTAGTGAAGGTTC
TGGAGGTTCTGCACAAATTCATTGGTACATAATGACCAGTCCATTTACTGATGAATCCACGAGGAAATTTTTCGAATGGCACAAGTACTTCGGCCTCGAA
GCAGATCAAGTAACCTTCTTCCAGCAAGGCACAATACCTTCTGTTGCAAATGATGGTAGATTTATCATGGAGACTCCATACAGAGTTTCTAAGGCTCCAG
ATGGAAATGGAGGAGTATATTCAGCTCTTAAATCATCAAGATTATTGGACGATATGGCATCAAGAGGGATTAAATATGTTGATTGCTATGGAGTTGACAA
TGCCTTGGTCCGTGTTGCTGACCCAACATTTCTGGGATATTTCATTGACAAAGGAGTCTCTGCTGCTGCAAAAGTTGTTCGTAAGGCTTATCCCCAAGAA
AAGGTGGGTGTATTCGTAAGGAGGGGGAAAGGTGGACCTCTTACCGTTGTTGAGTACAGCGAGTTGGATCAGTCCTTAGCTTCAGCAATCAATCAGCAAA
CTGGACGTCTTCGTTACTGTTGGAGTAATGTATGCCTACACATGTTCACCTTGGAATTTCTAAATCAAGTGGCAAATGGACTTGAGAAAGATAGCACTTA
CCATCTCGCAGAGAAAAAGATCCCTTCCATTCATGGATTCACAATGGGATATAAACTCGAGCAATTCATATTCGACGCGTTTCCATATGCTCCTTCAACT
GCTCTTTTTGAGGTATTGCGCGAAGAAGAGTTTGCCCCAGTGAAAAATGCCAATGGTTCGAATTACGACACTCCAGATAGTGCTAGGCTGCTTGTTCTTC
GGCTGCACAGCCGTTGGGTCGTTGCTGCAGGTGGCTTCTTGACTCATTCCGTGCCCTTGTATGCAACAGGCGTTGAGGTAAACCCGCTTTGTTCATACGC
TGGAGAAAATCTCGAAGCAATCTGTCGTGGAAGGACGTTTCATGCACCTTGTGAAATAACGTTCTAG
AA sequence
>Lus10038366 pacid=23158255 polypeptide=Lus10038366 locus=Lus10038366.g ID=Lus10038366.BGIv1.0 annot-version=v1.0
MIDGNSNASSSPLPPPPQALLERLKDYGQEDVFSLWEELSADERDFLVKDIESLDLPRLDRIIRCSLQSQALPVAAIEPVPEGSVSTVESRTMEEKERWW
KMGLKAISGGKLAVLLLSGGQGTRLGSDDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAHEASEGSGGSAQIHWYIMTSPFTDESTRKFFEWHKYFGLE
ADQVTFFQQGTIPSVANDGRFIMETPYRVSKAPDGNGGVYSALKSSRLLDDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVSAAAKVVRKAYPQE
KVGVFVRRGKGGPLTVVEYSELDQSLASAINQQTGRLRYCWSNVCLHMFTLEFLNQVANGLEKDSTYHLAEKKIPSIHGFTMGYKLEQFIFDAFPYAPST
ALFEVLREEEFAPVKNANGSNYDTPDSARLLVLRLHSRWVVAAGGFLTHSVPLYATGVEVNPLCSYAGENLEAICRGRTFHAPCEITF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31070 GlcNAc1pUT1 N-acetylglucosamine-1-phosphat... Lus10038366
[exp]
0 1
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Lus10003712
[exp]
1.0 0.9423
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Lus10004499
[exp]
2.8 0.9178
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10043168
[exp]
3.5 0.9123
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Lus10031497
[exp]
6.2 0.9155
AT2G01070 Lung seven transmembrane recep... Lus10036166
[exp]
6.3 0.9086
AT2G39750 S-adenosyl-L-methionine-depend... Lus10004702
[exp]
6.9 0.9048
AT1G20950 Phosphofructokinase family pro... Lus10025167
[exp]
7.4 0.8773
AT3G25040 ERD2B endoplasmic reticulum retentio... Lus10011846
[exp]
9.2 0.8681
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10004040
[exp]
11.2 0.8924
AT5G18280 ATAPY2 apyrase 2 (.1.2) Lus10006546
[exp]
15.0 0.8819

Lus10038366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.