Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70190 196 / 2e-63 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G36420 91 / 1e-22 Ribosomal protein L12 family protein (.1) AT4G37660 76 / 6e-17 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G06040 76 / 8e-17 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT2G03130 72 / 4e-16 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27830 44 / 2e-05 RPL12-A ribosomal protein L12-A (.1) AT3G27850 44 / 3e-05 RPL12-C ribosomal protein L12-C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036228 [exp] 296 / 1e-102 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10028336 [exp] 104 / 8e-28 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10041783 [exp] 100 / 2e-26 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10023839 [exp] 87 / 4e-21 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 87 / 4e-21 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10031756 [exp] 87 / 6e-21 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10031180 [exp] 84 / 4e-20 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10021011 [exp] 82 / 5e-19 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10013078 [exp] 49 / 3e-07 AT3G27830 175 / 7e-56 ribosomal protein L12-A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074800 [exp] 202 / 1e-65 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.007G019100 [exp] 94 / 8e-24 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.015G077200 [exp] 89 / 7e-22 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.004G224300 [exp] 82 / 2e-19 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.001G346100 [exp] 45 / 9e-06 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038367 pacid=23158352 polypeptide=Lus10038367 locus=Lus10038367.g ID=Lus10038367.BGIv1.0 annot-version=v1.0 ATGAGTTTGGTTCTAAGATTGCGGCATCACTTGCAAAATCGCTTGTGTGCAAAATTGGCCCTTCCACTCTTGAATCAGGCAAGCATCATCAATGGCGTCC CATCCCGTAGCTTTGCACAAGCCGCTAGGAAAGAAGACCAAGAAGAGGAAGAAGAGATAGAAATCGATCAGAGGCGGCTCCCAGCAGACTACGACCCTGC AACATTCGACCCAACCGAGCACCGCAGCCCTCCCACGGAGCGAGTTTTCAGGCTAGTCGACGAGGTTGCGAATCTGACATTAATGGAGGTGGCAGAGCTG GGTTCCATCATTATGAAAAGGAAAGGAATGACCGAACCGCCAGTTGTGGGAGTCATCAAGGGTGGAGTAGCTGCTGGGATGGCAATGCAGAAGGGAGGAG GATCGGCTTCGGCTAAGGAAGAGAAGAAGCCGGAGAAGACGGTTTTCGAGTTGAAGTTGGAATCTTACGAGGCGGCTTCGAAGATTAAGATCATCAAGGA GGTGAGGAGCTTTACTGATTTGGGACTCAAGGAGGCGAAAGATCTGGTGGAGAAGACTCCGTCGGTGTTGAAAGCTGGTGTGTCGAAGGAGGAAGGCGAG AAGATTATCGAGAAGTTGAAAGCTTTAGGTGCTAAAGTTGTGTTGGAATGA
AA sequence Show only first row Show all	>Lus10038367 pacid=23158352 polypeptide=Lus10038367 locus=Lus10038367.g ID=Lus10038367.BGIv1.0 annot-version=v1.0 MSLVLRLRHHLQNRLCAKLALPLLNQASIINGVPSRSFAQAARKEDQEEEEEIEIDQRRLPADYDPATFDPTEHRSPPTERVFRLVDEVANLTLMEVAEL GSIIMKRKGMTEPPVVGVIKGGVAAGMAMQKGGGSASAKEEKKPEKTVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKAGVSKEEGE KIIEKLKALGAKVVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	0	1
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	2.0	0.9396
AT4G39520			GTP-binding protein-related (....		Lus10005800 [exp]	2.8	0.9398
AT4G32605			Mitochondrial glycoprotein fam...		Lus10043448 [exp]	3.5	0.9139
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	3.5	0.9259
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	3.9	0.9258
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10002794 [exp]	8.2	0.8938
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	8.8	0.9376
AT5G53800			unknown protein		Lus10014800 [exp]	8.8	0.9183
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	9.4	0.9168
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	9.9	0.9142

Compare expression of checked genes

Lus10038367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.