Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 392 / 4e-138 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 391 / 5e-138 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 115 / 3e-29 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036229 [exp] 543 / 0 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 406 / 3e-143 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 401 / 3e-141 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 389 / 2e-136 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 336 / 2e-117 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10039039 [exp] 233 / 1e-76 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10027604 [exp] 112 / 4e-28 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 112 / 5e-28 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 104 / 2e-25 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159400 [exp] 439 / 5e-157 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 431 / 1e-153 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 403 / 3e-142 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 396 / 2e-139 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 114 / 5e-29 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 112 / 3e-28 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 108 / 7e-27 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 108 / 7e-27 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10038368 pacid=23158413 polypeptide=Lus10038368 locus=Lus10038368.g ID=Lus10038368.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGCAAAGGAAACAGTTGCCAAGACCCACCCACCGACCGGCCGGTCAGAGTCTACGCCGACGGAATCTACGATCTCTTCCACTACGGCCACG CCCGTTCTCTTGAGCAAGCAAAGAAATCGTTCCCGAATACTTACCTGTTGGTTGGATGCTGCAACGATGAACTCACCCACAAGTTTAAGGGTAAAACTGT CATGAACGATAAAGAGCGTTACGAATCCCTCAGACATTGCAGGTGGGTTGATGAGGTCATTCCAGATGCACCATGGGTTATCACACAAGAGTTCCTCGAT AAACATCAGATCGATTACGTGGCTCACGACTCCCTTCCCTATGCTGATGCAAGTGGTGCTGCAAATGATGTCTATGATTTTGTTAAGAAAGCTGGAAAGT TTAAGGAAACGCAACGAAGTGAAGGGATCTCGACGTCAGATGTTATAATGAGAATTGTGAAGGATTACAATGAATACGTTACGCGTAATTTGGCACGTGG ATACACAAGAAAAGATCTGGGTGAAAAGCGCCTGAGAGTGAACATGGGTCTGAAAAGGTTGCGTGAGAATGTGAAGAAGCACCGCGAGATTGTGGAAGAA AAGATACAAGTAGTGGCTAAAACTGCACGAGTGCATAGGAATGAATGGGTGGATAATGCGGATCGGTTGGTAGCTGGCTTTCTCGAAATGTTCGAGGAAG GATGCCACAAAATGGGAACAGCGATCAAACAGCGATTGACGAAACAGCAATTGATGGCAATCATTTATAACAGAGAAGGCGTCACTGATGATGAGGATGA AGACGACGAGGAGTACTACTTTGACGACTATGAAGACAACTCGGCAGATGAATAG
AA sequence Show only first row Show all	>Lus10038368 pacid=23158413 polypeptide=Lus10038368 locus=Lus10038368.g ID=Lus10038368.BGIv1.0 annot-version=v1.0 MAEGKGNSCQDPPTDRPVRVYADGIYDLFHYGHARSLEQAKKSFPNTYLLVGCCNDELTHKFKGKTVMNDKERYESLRHCRWVDEVIPDAPWVITQEFLD KHQIDYVAHDSLPYADASGAANDVYDFVKKAGKFKETQRSEGISTSDVIMRIVKDYNEYVTRNLARGYTRKDLGEKRLRVNMGLKRLRENVKKHREIVEE KIQVVAKTARVHRNEWVDNADRLVAGFLEMFEEGCHKMGTAIKQRLTKQQLMAIIYNREGVTDDEDEDDEEYYFDDYEDNSADE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	0	1
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	3.9	0.7952
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	4.6	0.8275
AT1G23110			unknown protein		Lus10013464 [exp]	4.9	0.8081
AT3G24630			unknown protein		Lus10011100 [exp]	7.5	0.8124
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	9.5	0.7725
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	10.1	0.7765
AT1G23110			unknown protein		Lus10007928 [exp]	14.8	0.7677
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	15.7	0.8125
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	17.3	0.7741
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	20.2	0.7653

Compare expression of checked genes

Lus10038368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.