Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 407 / 3e-138 Pectin lyase-like superfamily protein (.1) AT4G20050 325 / 3e-106 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036230 [exp] 639 / 0 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 376 / 6e-126 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 372 / 3e-124 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 369 / 3e-123 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 343 / 4e-113 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 322 / 3e-105 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 239 / 5e-74 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008700 [exp] 64 / 2e-12 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 40 / 0.0007 ND 48 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075300 [exp] 500 / 7e-175 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075400 [exp] 473 / 1e-164 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 447 / 8e-154 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G159900 [exp] 333 / 2e-109 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 328 / 3e-107 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038369 pacid=23158505 polypeptide=Lus10038369 locus=Lus10038369.g ID=Lus10038369.BGIv1.0 annot-version=v1.0 ATGAAGCATCATCATCATTGTTCTTCCACTAAATTTTACCTCCTCGTTCTGCTAGCAGGATTGCTTCACAATTCTTCCTGTTACACCACAGACAATAAAC TGTCAGAATTCCAGGAAAAGCTTCAACGTAAATCTTCTTCTTCTTCGTCAGCTTCCACCGTCAGGAATTCTTCTTCCCCAACTCTTCACCTCAAACGGTT TCGATTGCAGAGAGGGAAAGTGTTCTACCCAATCGGGTACGGAGCCGACCCGAGCGGCTCGATAGACAGTCATGACGCGATTCTCAGAGCTATCGACGAA GCGTTTCGATTGCAGAAGCACCACCGCCGTCAATTGCTTCCCGGAATTCAAGATTTGGGCGGGATCGTCCTCGATCTCCAAGGCGGGAACTTCCTCGTCA GCAAACCGATCCAGCTCCCTCCCGGCCGCGGCAACTTCGTGGTAAGAAGCGGGACCCTACGTGCAACCAATGATTTTCCAGGAAACGGCCACCTCATCGA GCTATGGTCAACGAATTCGCAGCAGAAGCCGGGGAAAGGATCGTATTACGAAGGGATTACATTCAGAGACATCCTCTTCGATTCCACCTACAGGGGCGGC GGAATCCGGATCGTGGACTCCGTCAGGATCCGAATCGACCACTGCTTCTTCCTCCATTTTACGACCCAAGGGATCCTGGTGATCAAGGGCCACGAGACCT TCGTCTCCAACTGCTTCCTCGGCCAGAACCCCACCGTCGGTGGCGACCGCAACGAGATCCGCTACTCCGGCACGGCGGTCGACATCGACAGCAACGACAA CGCGCTCACCAACGTCGCCATTTTCTCCGCCGCCGTCGGCGTCATCCTGAGGAGCGAGGCTAACACCGTCACCGCCGTCCACTGCTACAACAAGGCCAAC GTCTACGGCGGCGTCGGGATCGTGGTGAAGCCCGAGGCATCGCTGACGAGGATCACCGGTTGTTATATGGATTTCACTGATGTGGTGATCGAGGATCCGG ATCAGGTCCGGGTCACGGACGGGCTGTTCATTGGAGGGGCGAACGTAGTGTTGAAATCGATTAGGGGCTCGATTTCGGGGCTGAATGTGGAAGGGAATAT GTTCAGAGGGTACGAAGGGAGAGGGAATTCGATTGTGGAGCTGGACGGGAACTTCACGGCGGTGGATCAGGTGGTGGTGGATCGGAACAGTGTGAAGGAT ATGGTGTTGAAATCGACGGCGGGGAAGATGACGGTTGCGGGCTACGGGTCAAGGTGGGTTGCGGATTTTTCTGGGGTTTTGATTTTCCCCGATAGGGTTT CTCACTTTCAGTACGCGTTTCACGTTCGAGGCGGCGGAGGCGGAGAGAACGTGACGCACTGGGTGAGCGGAGTGAGGAAGAATGCGGTGGTTGTGGAGAG TAGCGCGGTGGGGAACGCCGTGATATCGGTGGTTGTTGATCAGTACAATGCGGTGGATGAAACTAACTTTTTGTGA
AA sequence Show only first row Show all	>Lus10038369 pacid=23158505 polypeptide=Lus10038369 locus=Lus10038369.g ID=Lus10038369.BGIv1.0 annot-version=v1.0 MKHHHHCSSTKFYLLVLLAGLLHNSSCYTTDNKLSEFQEKLQRKSSSSSSASTVRNSSSPTLHLKRFRLQRGKVFYPIGYGADPSGSIDSHDAILRAIDE AFRLQKHHRRQLLPGIQDLGGIVLDLQGGNFLVSKPIQLPPGRGNFVVRSGTLRATNDFPGNGHLIELWSTNSQQKPGKGSYYEGITFRDILFDSTYRGG GIRIVDSVRIRIDHCFFLHFTTQGILVIKGHETFVSNCFLGQNPTVGGDRNEIRYSGTAVDIDSNDNALTNVAIFSAAVGVILRSEANTVTAVHCYNKAN VYGGVGIVVKPEASLTRITGCYMDFTDVVIEDPDQVRVTDGLFIGGANVVLKSIRGSISGLNVEGNMFRGYEGRGNSIVELDGNFTAVDQVVVDRNSVKD MVLKSTAGKMTVAGYGSRWVADFSGVLIFPDRVSHFQYAFHVRGGGGGENVTHWVSGVRKNAVVVESSAVGNAVISVVVDQYNAVDETNFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	0	1
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	4.5	0.7985
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	10.5	0.8442
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	12.2	0.8254
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	14.5	0.7630
AT1G11440			unknown protein		Lus10018397 [exp]	17.7	0.7455
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005662 [exp]	20.4	0.7287
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	23.2	0.7620
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	27.3	0.8063
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	28.9	0.7449
AT1G12310			Calcium-binding EF-hand family...		Lus10024567 [exp]	32.2	0.7306

Compare expression of checked genes

Lus10038369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.