Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20050 354 / 1e-118 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) AT4G20040 261 / 2e-82 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036231 [exp] 665 / 0 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038369 [exp] 238 / 3e-73 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10008272 [exp] 223 / 1e-67 AT4G20040 453 / 4e-156 Pectin lyase-like superfamily protein (.1) Lus10033240 [exp] 215 / 1e-64 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 211 / 4e-63 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 208 / 5e-62 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 183 / 5e-53 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10008700 [exp] 48 / 6e-07 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1) Lus10008699 [exp] 45 / 7e-06 ND 48 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159900 [exp] 417 / 4e-143 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 390 / 7e-133 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G075400 [exp] 275 / 1e-88 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 263 / 2e-83 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 252 / 6e-79 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038370 pacid=23158382 polypeptide=Lus10038370 locus=Lus10038370.g ID=Lus10038370.BGIv1.0 annot-version=v1.0 ATGTCCTTAAACACTCTGTTCCCTCTGTTTTTCTTCACGGCGGCCATTGTCTCTTCCACCCTCGCCGGCGGAATCAGCCACCACCAGAAAATTTTATCAA TGCAGGAGCTCCAGTCCTCCATCGCATCCCGCCGCCAATTAGCCACCACAGCTCCTTCCCCTTCTCCGATCGCAGTCTCTAAATCTCCGCCGCCGCAGGG CGGCGGTTCTTCTTCATCACTTGTATATCTATTCACCGCCTACGGGGCCGATCCGACCGGCGTCAAGGACAGCTCCGACGCAATCTCTAGACTGCTTGCC GATGTAGTCAAAGGACCCACCTCTGGCACAATGCTCGACGGAATAAAGAATTACGGCGGCGCTCAAATCCATCTCGGCGGTGGAAACTACGTCATCACCA AACCGATCACGTTCCCTTCCGCCGGCGTCGGTAACATCGTGATCGCTGGAGGGACGCTGCGAGCGTCGGATGATTTCCCGACGGACGGTTACCTGATCGA CCTATCGGCCACGTCGTCAAAGACGTATGATTACGAATATATTACATTCCGTGACCTAATGCTGGACGCAAATTTCAGAGGCGGCGGCGTATTCATTAAA AACGCCGTCCGAGTCACCGTCGACAATTGCTACATCACCCATTTTTTCTCCGCCGCCGTCGGGATCATGATCAGTGGCCAGGCCAACATCCTCACCGGCG TCCACTGCTACAACAAGGCGTCCGGGTTCGGCGGCACTGGGATCTACATCAAGCTTCCGGGGCTCGCCCAGACGAGGATCGTCAACTCCTACCTCGACTT CACCGGAATCGTCGCCGAGGATCCCGTCCAGCTGACGATCTCCGATAGCTTCTTCCTCGGCGGGTCGTTCGTTGTTTTCAAGTCGGTGAACGGCGTCGCG AAAGGGGTGAACATCGTGAACAACATGTTCAACGGCGGCGGAGGGGACATTGTGCAATTGGACGGAGATTTCAAAGAAATCGAGGGAGTTGTAGTCGACG GGAACAACGTTCACGGCGGAATGAATCTGAAGGCGACGGCGGCGCAGGGATCGACGAGCGGGAACGGGACCACGTGGACGGTGGATTTCAATTCCGTTCT GTTGTTTCCAGATAGAATCAATCACGCGCAGTACTCGCTAAGCTCTAGCGGGACGGCGTTTCCGAGACACGCGCTTAGGAATGTGACCGGGAATCTGGTG GTGGTGGAATCTGACGTGGCGGTTACGGCGAGTGTGTTCGTCGCCGTGAGTCAGTAA
AA sequence Show only first row Show all	>Lus10038370 pacid=23158382 polypeptide=Lus10038370 locus=Lus10038370.g ID=Lus10038370.BGIv1.0 annot-version=v1.0 MSLNTLFPLFFFTAAIVSSTLAGGISHHQKILSMQELQSSIASRRQLATTAPSPSPIAVSKSPPPQGGGSSSSLVYLFTAYGADPTGVKDSSDAISRLLA DVVKGPTSGTMLDGIKNYGGAQIHLGGGNYVITKPITFPSAGVGNIVIAGGTLRASDDFPTDGYLIDLSATSSKTYDYEYITFRDLMLDANFRGGGVFIK NAVRVTVDNCYITHFFSAAVGIMISGQANILTGVHCYNKASGFGGTGIYIKLPGLAQTRIVNSYLDFTGIVAEDPVQLTISDSFFLGGSFVVFKSVNGVA KGVNIVNNMFNGGGGDIVQLDGDFKEIEGVVVDGNNVHGGMNLKATAAQGSTSGNGTTWTVDFNSVLLFPDRINHAQYSLSSSGTAFPRHALRNVTGNLV VVESDVAVTASVFVAVSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	0	1
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	1.0	0.9788
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	2.4	0.9653
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	3.7	0.9672
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	4.2	0.9500
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	4.5	0.9576
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	6.3	0.9510
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	7.5	0.9549
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	8.8	0.8690
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	8.9	0.9469
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	9.2	0.9574

Compare expression of checked genes

Lus10038370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.