Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20070 705 / 0 ATAAH allantoate amidohydrolase (.1) AT5G43600 180 / 4e-51 ATAAH-2, UAH ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036233 [exp] 847 / 0 AT4G20070 697 / 0.0 allantoate amidohydrolase (.1) Lus10021221 [exp] 142 / 2e-37 AT5G43600 607 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Lus10022211 [exp] 138 / 4e-36 AT5G43600 603 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160100 [exp] 775 / 0 AT4G20070 729 / 0.0 allantoate amidohydrolase (.1) Potri.010G076100 [exp] 164 / 3e-45 AT5G43600 680 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10038372 pacid=23158170 polypeptide=Lus10038372 locus=Lus10038372.g ID=Lus10038372.BGIv1.0 annot-version=v1.0 ATGGCGTCGATTCTCCATCTGCTCTTTCTCTTAATTTCAATCTTGGGTCGTCCTGCGTGGAGTGAGGCGGTCAATGGCCGGAGTAGGAGTGACATGTATG TCGATATATTGAAAGACGAGTCTGTCTCCAGACTCCTTGAACTCGGAAAGGTGAGTGATGCTGATGGATATCTTGAGAGGACGTTCATGAGCCCAGCTTC AATGAGAGCTGAAAATCTCATACGTGGTTGGATGGAGGATGCCGGTTTGACTACGTGGATAGACTTGATGGGGAATGTACATGGTCGAGTTCATGGACTT AATCCAAGTGCAGAAGCATTATTGATTGGTTCCCATTTGGATACCGTCATTGATGCAGGGATTTTTGATGGGGCGCTAGGTATTGTCTCAGCAATATCAG CTTTAAAGGTTTTGAAAACCACTGCAAGTTTGGAGAAACTAAAACGGCCAGTTGAGATCATAGCCTTCAGTGATGAGGAGGGGGTGAGATTTCAGTCTAC TTTTCTTGGCAGTGCTGCTCTAGCCGGAGTCCTACCGGTGTCAGCATTAAATGCATCGGATAAGAGTGGTGCAACGGTGCAAGACGTTCTGAAGGAGAGA TCTTTTGCAATTACAGAAGAAATCTTGCCGCAACTGAAGTATGATCCGAACTCTGTCTGGGGTTATGTTGAGATCCATATTGAACAAGGACCTGTTCTGG AATGGGTTGGCTTTCCAGTCGGTGTGGTGAAAGGCATTGCTGGACAGACACGGCTAAAGGTCACTGTGAGAGGCTCACAAGGGCATGCCGGAACAGTTCC AATGTCCATGCGTCAGGATCCCATGGCTGCAGCTGCTGAACTAATCGTGAAACTTGAAACCATTTGCAAGAGTCCCAAAGACTTCCTATCCTATGACAGT CAATGCAGTGATGCAACAGTAGAATCGCTTTCCAATTCGCTTGTCTGTACTGTTGGCGAGATATCTACTTGGCCAAGTGCAAGCAACGTCATTCCAGGAC AGGTAACCTTCACAGTGGACCTGCGCGCAATGGATGACATGGGACGTGAAGCCGTCCTGTACGAATTATCCAATCAAGCATATCGGATATGTGACAGACG ATCCGTCTCTTGCATTATCGATCGCAAGCACGATGCAGATGCAGTGCTCTGCAATCCGGAGTTGAGTTCGCAGCTGAAGGTTGCGGCCAATTCTGCTGTC GAGAGAATGACAGGTGAGGTTCAAGAGGACGTTCCTGTGCTTATGAGCGGCGCTGGGCATGATGCAATGGCTATGGCTCATCTAACCAAGGTAGGAATGC TATTTGTTAGGTGCAGGGGAGGAGTAAGCCACTCTCCAGCAGAGCATGTGTTGGATGATGATGTTTGGGCTGCTGGTTTGGCTCTACTTGCATTTCTTGA AACGCAAATGTAA
AA sequence Show only first row Show all	>Lus10038372 pacid=23158170 polypeptide=Lus10038372 locus=Lus10038372.g ID=Lus10038372.BGIv1.0 annot-version=v1.0 MASILHLLFLLISILGRPAWSEAVNGRSRSDMYVDILKDESVSRLLELGKVSDADGYLERTFMSPASMRAENLIRGWMEDAGLTTWIDLMGNVHGRVHGL NPSAEALLIGSHLDTVIDAGIFDGALGIVSAISALKVLKTTASLEKLKRPVEIIAFSDEEGVRFQSTFLGSAALAGVLPVSALNASDKSGATVQDVLKER SFAITEEILPQLKYDPNSVWGYVEIHIEQGPVLEWVGFPVGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVKLETICKSPKDFLSYDS QCSDATVESLSNSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQAYRICDRRSVSCIIDRKHDADAVLCNPELSSQLKVAANSAV ERMTGEVQEDVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGVSHSPAEHVLDDDVWAAGLALLAFLETQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20070		ATAAH	allantoate amidohydrolase (.1)		Lus10038372 [exp]	0	1
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10029374 [exp]	6.0	0.7140
AT2G36895			unknown protein		Lus10001393 [exp]	12.4	0.7032
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	26.5	0.6811
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	30.0	0.6455
AT1G01760			adenosine deaminases;RNA bindi...		Lus10017815 [exp]	31.9	0.6162
AT1G16040			unknown protein		Lus10015585 [exp]	38.2	0.6933
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	48.4	0.6707
AT1G36320			unknown protein		Lus10036666 [exp]	58.7	0.6284
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	69.1	0.6356
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	96.4	0.6160

Compare expression of checked genes

Lus10038372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.