Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30970 386 / 1e-133 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036234 [exp] 657 / 0 AT1G30970 430 / 1e-150 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074200 [exp] 415 / 2e-143 AT1G30970 392 / 8e-135 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2) Potri.001G160700 [exp] 412 / 2e-142 AT1G30970 348 / 2e-117 suppressor of FRIGIDA4, zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038373 pacid=23158499 polypeptide=Lus10038373 locus=Lus10038373.g ID=Lus10038373.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAGAAGAGAGTTGCGTCCAAAGTTTGGTGCTACTACTGCGATCGCGAATTCGACGACGAGAAGATCCTTGTTCAGCACCAGAAGGCCA AGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTTTCCACCGCCGGCGGCATGACCATTCACGTACTCCAGGTCCACAAGGAGTCGGTCACCAAAGTTCC CAATGCAAAACCAGGAAGGGAAGCAACAGATATTGAAATATATGGGATGCAAGGAATTCCACCTGACGTCTTGGCTGCCCACTATGGAGAAGATGATGAC GAAACTCCCTCTAAAGCAGCCAAAATAGATATATCTCATCCTCCATATGCTGGAATAATTCCAGGATCGCTGCCTGTTGGATATCCTCCACGACCTTTAG GTGCCATGCCCCAAGTTTACAGTTCCGGTATGCCTGTTCCACATGCTGGTTGGGGAGTTCCTCAGCGTCCCCAGACTTGGTACCCACAGAATCCTAATGT TTCAGTTCCTCCTCAAGCTCCTGTAGGATATAGTCACCAGCCATTGTTCCCTGTGCAAAATATGAGAGCTCCTGGCCTATCAGCTCCATCGCCTCTACTT CCTGCTCAGGTGGCTCCTCCTGGAATGCCTCCATCTACTCCTCCACTCCCTATGTCTCAACCACTATTTCCTGTTGTTAACAACAGTTTACAGCAAGGCC AACCATTTTCTTCTCCTTTACCGCCATCTAGTATTCCGTCTGGAGAACTAAAAGGGCAAGTGGATGTGCACTCAGGACTTAACGGTTCTGTCATGGCAGC TGGATACCAGCTCCCTTCAGGGCCAGGTTCAGTTTTGCCTAATTCGCATTCCTATGCCTCTGGTCCAAATACGGCCGGTCCATCTATTGGACCACCTCCT GTAATTGCAAACAAAGCTAATGCTAACCTGCAAAGTGAAGTCTATTTAGTTTGGGATGACGAGGCCATGTCTATGGAGGAAAGAAGAATGTCTCTAACCA AGTATCAGGTGCATGATGAAACTAGCCAGCTTGCTGGAACAACTGAAGGATACTGCATTGATCCGGGTATGAGTTCAATCGACGCAGCTATTGACCGGAG GATACTGGAGAGCAGACTGGCTGGCCGAATGGCTTTCTAG
AA sequence Show only first row Show all	>Lus10038373 pacid=23158499 polypeptide=Lus10038373 locus=Lus10038373.g ID=Lus10038373.BGIv1.0 annot-version=v1.0 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMTIHVLQVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEDDD ETPSKAAKIDISHPPYAGIIPGSLPVGYPPRPLGAMPQVYSSGMPVPHAGWGVPQRPQTWYPQNPNVSVPPQAPVGYSHQPLFPVQNMRAPGLSAPSPLL PAQVAPPGMPPSTPPLPMSQPLFPVVNNSLQQGQPFSSPLPPSSIPSGELKGQVDVHSGLNGSVMAAGYQLPSGPGSVLPNSHSYASGPNTAGPSIGPPP VIANKANANLQSEVYLVWDDEAMSMEERRMSLTKYQVHDETSQLAGTTEGYCIDPGMSSIDAAIDRRILESRLAGRMAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	1.0	0.9348
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	1.4	0.9341
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	2.0	0.8426
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	3.0	0.8030
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	3.5	0.8191
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	5.7	0.8080
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	8.7	0.8547
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	9.5	0.7858
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	12.1	0.7793
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	12.2	0.7662

Compare expression of checked genes

Lus10038373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.