Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 74 / 9e-17 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 74 / 1e-16 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 68 / 2e-14 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 67 / 3e-14 HSP70B heat shock protein 70B (.1) AT5G02500 67 / 6e-14 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 66 / 7e-14 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 66 / 7e-14 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 66 / 8e-14 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 66 / 8e-14 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 43 / 8e-06 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019915 [exp] 103 / 4e-27 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10019911 [exp] 100 / 4e-27 AT5G28540 250 / 1e-79 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 85 / 2e-20 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 79 / 2e-18 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007777 [exp] 78 / 2e-18 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013056 [exp] 74 / 1e-17 AT5G28540 190 / 1e-57 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 77 / 2e-17 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 76 / 3e-17 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 72 / 8e-16 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 72 / 6e-16 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 72 / 7e-16 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 72 / 8e-16 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 69 / 8e-15 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042700 [exp] 67 / 3e-14 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 67 / 4e-14 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 67 / 5e-14 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 66 / 7e-14 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 66 / 8e-14 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 66 / 1e-13 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10038374 pacid=23158335 polypeptide=Lus10038374 locus=Lus10038374.g ID=Lus10038374.BGIv1.0 annot-version=v1.0 ATGGTGAAGGTTAAAGCAGAGATAATCAAAGAAGATGTGAAGCCGGCGATAACCAGAGGTGGAAAAGTAAAAACAGAGATAATAGAGACAGAGGGCAACG GCGGAGGAGATGTTGTGATAGGGATTGATCTCACAACTTTCTCTTGCGTCGCGGTCGCCATTAACGGCAACATAGAAATCATAGCCAACGACCAAGGCAG CCGCACAACTCCTTCCGCCGTCGGCTTCTCCGCCTTCAATTCCGAGCGTCTCATCGGCGAAGCAGCCAAAAATCAGGCCACTCTCATTAACTTCCCCCCA TATCCAAACATGCATAAAGATTCCAACTTTTCAGTCTAA
AA sequence Show only first row Show all	>Lus10038374 pacid=23158335 polypeptide=Lus10038374 locus=Lus10038374.g ID=Lus10038374.BGIv1.0 annot-version=v1.0 MVKVKAEIIKEDVKPAITRGGKVKTEIIETEGNGGGDVVIGIDLTTFSCVAVAINGNIEIIANDQGSRTTPSAVGFSAFNSERLIGEAAKNQATLINFPP YPNMHKDSNFSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10038374 [exp]	0	1
AT3G25400			unknown protein		Lus10015730 [exp]	4.2	0.7568
AT2G33580			Protein kinase superfamily pro...		Lus10010032 [exp]	46.4	0.6335
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	63.7	0.7103
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	119.8	0.6900
AT2G33580			Protein kinase superfamily pro...		Lus10000139 [exp]	173.6	0.6266

Compare expression of checked genes

Lus10038374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.