Plant FIBer expression Database

Lus10038375 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14050 670 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G25150 53 / 6e-07 TAF5 TBP-associated factor 5 (.1)
AT1G11160 47 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G60940 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036236
[exp]
943 / 0 AT5G14050 707 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G218600
[exp]
771 / 0 AT5G14050 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.018G020200
[exp]
50 / 3e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Potri.006G263400
[exp]
47 / 3e-05 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
Representative CDS sequence
>Lus10038375 pacid=23158253 polypeptide=Lus10038375 locus=Lus10038375.g ID=Lus10038375.BGIv1.0 annot-version=v1.0
ATGAGCTTTATTTCATATAATGCTGGGACTAAGAGAGGCAAGGGTCGTAAAGATACGGAAGACGAGCCTGCTTTCATGGGCGGTGGTGAAGAAGATGGGG
ATAGGAAGATGGGAACTGAGTTGGTGAAGAAAAGAAGGAAAGAGAGAAACGAGCAAACTGTTGTGGAGGAAATCAAGGAAATGAAGAAGCTCGAGAACTT
CCTGTTTGGATCACTTTATTCTCCTGTGGAATTTGGAAAGGAGGAGGAGCAAGAGGTTGTAAACGATGATGGTTCCGCTTTGTTTTTCGTTGATCGTTCC
GCGAATAGTGAGTTGTTGGCGGAGGAGGATGACGAAGTTGATTATGAAGAAGATGACGAAGAAGTAGAAGCTAACGAAAGGAAAGCTGCGTGGGTTGATG
ACGAAGAGGAAGCTACAAAGATCAATATTTCGAGTGTTAATAGATTGAGGAAGCTGAGGAAGGAGGAGGAAGAGAAAGTTATTTCTGGTTCAGAGTATGT
CTCGAGGTTAAGGGTTCAGCATTCGAAGCTGAATCCCGGCACTGAATGGGCGAGGCTTGATCGGTCCGATTATGAACGTTACAGCGATGAATCTTCCGAC
GAAGATATCAACAACAACAATGTCGGTCCTGCCGAAGGTGGTGTTGATGAAATCCTTAGGAGTAATGAAGACCTTGTGGTGAAGAGCCGAGTGAAATTGC
TGCCCGGTCTTCTCGAGTACTCGAGACTTGTGGATGCTAATGCTGAAGATCCTTCAAGTGGTCCGATTAATTCGGTCGAGTTCCACCGAAACGCTCAGCT
GCTACTCACTGCTGGACTGGATAAAAGGATTCGGTTTTTCCAGATCGATGGGAAGCGTAATACAAAGATACAAAGCATCTTCATCGACGACTGTCCGATC
CGAAAAGCCTCATTCTTGCCTGATGGATCGCAGGTGATCATTTCAGGAAGAAGGAAGTTCTTCTACAGCTTCGATTTGGTGAAGGCCAAAGTCGATAAAA
TCGGACCCTTGGTTGGCAGGGAAGAGAAAAGCTTGGAACTTTTCGAAGTCTCTCCTGATTCGAAAACCATTGCCTTTGTGGGTAACGAAGGTTACATATT
ACTGGTTTCATCAAAGACTAAGGAGCTCATCGGAACTGTGAAGATGAATGGTACAGCTCGATCGTTAGCTTTCTCTGCTGATGGACAGCAGCTTATAAGC
CATGGTGGAGATGGCCAGGTTTATCACTGGGATCTTAGAACGAGGACATGTATTCACAAGGCAGTCGACGAAGGTTGCATCAATGGCACTGCACTAACCA
CTTCTCCGGTGGGGAACTTCTTTGCGGCCGGTTCAGATAGCGGGATTGTGAATGTGTACAATAGAGAGGAGTTCTTAGGTGGGAAGAGGAAACCAGTGAA
GGCGATAGAGAACTTGACGACAAAAGTAGACTTTATGAAGTTCAATAAGGATGCTCAGATACTGGCGATATGTTCGACCATGGGGAAGAATGCTATGAAG
TTGATACATGTACCTTCGTTCACAGCTTTCTCGAACTGGCCTCCTCCGAACAAGACGATACACTATCCTCGCTGTTTGGATTTCAGTCCCGGTGGAGGTT
TCATGGCCGTGGGGAACGCTGCTGGTAAAGTATTGCTTTACAAGTTGCATCACTACAATCACGCCTAG
AA sequence
>Lus10038375 pacid=23158253 polypeptide=Lus10038375 locus=Lus10038375.g ID=Lus10038375.BGIv1.0 annot-version=v1.0
MSFISYNAGTKRGKGRKDTEDEPAFMGGGEEDGDRKMGTELVKKRRKERNEQTVVEEIKEMKKLENFLFGSLYSPVEFGKEEEQEVVNDDGSALFFVDRS
ANSELLAEEDDEVDYEEDDEEVEANERKAAWVDDEEEATKINISSVNRLRKLRKEEEEKVISGSEYVSRLRVQHSKLNPGTEWARLDRSDYERYSDESSD
EDINNNNVGPAEGGVDEILRSNEDLVVKSRVKLLPGLLEYSRLVDANAEDPSSGPINSVEFHRNAQLLLTAGLDKRIRFFQIDGKRNTKIQSIFIDDCPI
RKASFLPDGSQVIISGRRKFFYSFDLVKAKVDKIGPLVGREEKSLELFEVSPDSKTIAFVGNEGYILLVSSKTKELIGTVKMNGTARSLAFSADGQQLIS
HGGDGQVYHWDLRTRTCIHKAVDEGCINGTALTTSPVGNFFAAGSDSGIVNVYNREEFLGGKRKPVKAIENLTTKVDFMKFNKDAQILAICSTMGKNAMK
LIHVPSFTAFSNWPPPNKTIHYPRCLDFSPGGGFMAVGNAAGKVLLYKLHHYNHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14050 Transducin/WD40 repeat-like su... Lus10038375
[exp]
0 1
AT2G43770 Transducin/WD40 repeat-like su... Lus10012230
[exp]
1.7 0.9530
AT1G53850 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALP... Lus10037454
[exp]
2.4 0.9535
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Lus10023565
[exp]
3.0 0.9595
AT5G14050 Transducin/WD40 repeat-like su... Lus10036236
[exp]
3.3 0.9365
AT4G26190 Haloacid dehalogenase-like hyd... Lus10034676
[exp]
4.6 0.9391
AT5G20600 unknown protein Lus10011961
[exp]
7.1 0.9105
AT4G00930 CIP4.1 COP1-interacting protein 4.1 (... Lus10011397
[exp]
7.7 0.9381
AT1G27090 glycine-rich protein (.1) Lus10037224
[exp]
9.2 0.9473
AT3G11400 ATEIF3G1, EIF3G... eukaryotic translation initiat... Lus10012833
[exp]
9.7 0.9460
AT5G57280 RID2 root initiation defective 2, S... Lus10007484
[exp]
10.2 0.9219

Lus10038375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.