Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44740 142 / 7e-38 POLH Y-family DNA polymerase H (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036237 [exp] 253 / 9e-79 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G152600 [exp] 161 / 2e-44 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [flax] [poplar] IMS impB/mucB/samB family
Representative CDS sequence Show only first row Show all	>Lus10038376 pacid=23158130 polypeptide=Lus10038376 locus=Lus10038376.g ID=Lus10038376.BGIv1.0 annot-version=v1.0 ATGCCGGTGGCGCGACCCGAATCGTCCCATCCAAGAATCATAGCCCACGTCGACATGGATTGCTTCTACGTCCAAGGTATTCTCTCATTCCTGGAATTTC CTAGTCCAGTCGAGTTATATGCTTGCTCTTTCTCGGTAGTGGAGCAGAGGAAGCAACCGGAGTTGAGAGGTTTACCTGCTGCGGTGGTGCAGTACAACGA GTGGAAAGGTGGCGGGTTGATTGCTGTTAGCTACGAGGCCTGTGGATTTGGGGTCAAGCGGTGTGTAATGTTGGGGCTTTTCCGTTTCTTTGAGATGCTA GCGAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACTGTTGTCCCCTTGTCATGTGTAGATGGGATGCTCCATTCCTTCCCAATAAAGAACATGT TCAACACTGGCTCAACCAATAAGCGTATAGCACATACTCTTACTGTCCATGCTACAGCATATGTGTTGACCTTATTGGGAGCTCTTCTGCAGTCAAATAA CAGAGATTCTCATAGGAAGTTTCCTTCGAAATCTTGTCCATTGAGGTACGGAACTGCCAAGATTCAAGAGGATGCATTTAACCTATTTCAAGCTGGATTA CGTGAATACCTGAGCTCTCATGTGGTGAGTACTCAAGGAAGTTCTCATCATGGATGGGGAATAACAGGTCTATCAGTTTCAGCAAGCAAAATTATGGACA TACCTACTGGAACATGCTCAATCATGAAATACTTTGCTGGCAAGCAAACATCTGATTCTCCTGCAAAGCAAGTGGCCAGTAACTTCATCGACGAAACCAC TCCATCATCATCCTCGGGCAGAGGAGCAACATGGAAGTACAAGATTGACGAGATTGACGAATCGGTGATCGCCGAGTTACCAAAGGAAATTCAAGCCGAA ATCAACGCCTGGATCCGACCCCAGAAAAGGGCCAATATAGTCAGAGGAGGTGCTACTATTGCCCACTATTTCTCAGCAAGCCAGAAGTAG
AA sequence Show only first row Show all	>Lus10038376 pacid=23158130 polypeptide=Lus10038376 locus=Lus10038376.g ID=Lus10038376.BGIv1.0 annot-version=v1.0 MPVARPESSHPRIIAHVDMDCFYVQGILSFLEFPSPVELYACSFSVVEQRKQPELRGLPAAVVQYNEWKGGGLIAVSYEACGFGVKRCVMLGLFRFFEML AKLASAMNKPAQQTVVPLSCVDGMLHSFPIKNMFNTGSTNKRIAHTLTVHATAYVLTLLGALLQSNNRDSHRKFPSKSCPLRYGTAKIQEDAFNLFQAGL REYLSSHVVSTQGSSHHGWGITGLSVSASKIMDIPTGTCSIMKYFAGKQTSDSPAKQVASNFIDETTPSSSSGRGATWKYKIDEIDESVIAELPKEIQAE INAWIRPQKRANIVRGGATIAHYFSASQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10038376 [exp]	0	1
AT5G44740		POLH	Y-family DNA polymerase H (.1....		Lus10036237 [exp]	4.0	0.7264
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	11.6	0.7087
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	13.9	0.7467
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	19.1	0.6747
AT1G33970			P-loop containing nucleoside t...		Lus10009483 [exp]	21.0	0.6439
					Lus10024018 [exp]	21.9	0.6017
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	27.0	0.6799
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10042030 [exp]	31.2	0.6399
AT3G24820			BSD domain-containing protein ...		Lus10025929 [exp]	37.8	0.6113
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018034 [exp]	46.0	0.6155

Compare expression of checked genes

Lus10038376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.