Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20090 842 / 0 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 312 / 3e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 286 / 4e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 273 / 5e-83 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 276 / 1e-82 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 273 / 2e-81 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 246 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 246 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 248 / 1e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 242 / 5e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036238 [exp] 1304 / 0 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 325 / 1e-100 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 281 / 2e-84 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 268 / 4e-80 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030513 [exp] 266 / 3e-79 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 267 / 4e-79 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 270 / 5e-79 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 271 / 7e-79 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 268 / 2e-78 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G154800 [exp] 940 / 0 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 939 / 0 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 330 / 2e-103 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 285 / 9e-87 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 283 / 1e-85 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 278 / 2e-84 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 275 / 9e-83 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 277 / 1e-82 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 270 / 2e-81 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 269 / 2e-81 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038377 pacid=23158403 polypeptide=Lus10038377 locus=Lus10038377.g ID=Lus10038377.BGIv1.0 annot-version=v1.0 ATGCCAAAATGCCCTCTACGCGCCACCACCACTTTACTCCTCAACCTTCTCTCTCCACAGTCCTCTGCATTCCATCAATCACTCCTCTGTAAGTCCTCTT CCGCAGTCTCTCCCCACTTCAACAACTTCTCATCACTTCCAAATACATCCCTTCAACGTCAACTCCACAAGGATGACGCAAAGAACGAACCCGAGCTCCC GATTCCCGATAATATATTCCAGTCCCCCACAAGGATGGGCTCCTACCAGCTGGGCGATTCCACTTTCTACTCTCTCATCGACAGCTACGCCACTTCCGGC GATTTCGACTCGTTGGAGAAGGTTCTCGGTCGAATGAAGCGAGAGAACAGAGTGTTTATGGAGAAAAGCTTCATTCTTGTGTTTAAAGCTTATGGGAAAG CTGGGCTGCCTGAGAATGCACTCCAACTGTTCGACAGAATGTCTGACGAGTTTCAGTGTAAGCGGACCGTTAGGTCGTTTAACTCTGTTCTCAACGTTGT TATACAAGCTGGTCTTTACGGCCGTGCTTTGGAGTTTTATGATCACGTAGTTGGTTCCAAACACGTCAACATATCGCCTAATGTGTTGACTTTCAATTTG ATTGTTAAGGCCATGTGTAAGCTTGGAATGGTTGACAAGGCAATAGAGGTGTTCCGGGAGATGCCTGTGAGGAAATGTGATCCGGATGTTTACACCTATT GCACACTAATGGACGGGCTTTGCAAGGAGGATAGGATCGATGAAGCCGTTTCGCTATTGGACGAGATGCAAGTTGAAGGGTGCTTTCCGAATTCGCCAAC TTTCAATGTTTTGATCAATGGGTTGTGCAAGAAGGGCGATTTGGTCCGGGCGGGGAAGATTGTTGATAATATGTTCTTCAAAGGGTGTGTTCCTAATGAG GTGACTTATAACACACTTATTCATGGTTTGTGTCTAAGAGGTAAGTTGGATAAAGCGGTGAGTCTTTTGGATCGAATGGTGTCTTATAAATGCGTTCCGA ATGGGGTTACTTACGGTACGATCATCAATGGCCTTGTGAAGCAAAGTAGGGCACTTGACGCGGTTCAAGTGTTGGCTTCGCTGGAAGAGAGAGGGTATAG TGTAAATGAATATGTTTACTCAGCCTTGATCAGTGGGTTGTTCAAAGAGGGAAAGGCTGAAGAAGCAATGAAGCTTTTCAATGGGATGGTAGAAAAAGGA TGTAACTTTAACACTGTTGTATATAGTGTTGTGATAGATGGTTTGTGTAAAGATGCAAAACCAGAAGAAGGGTTAGAAATTCTATTGGAAATGGAGAATA AGGGTTGTGTACCCAATGCCTATACTTACAGCTCTTTGATGAAGGGATTCTTCGAGACAGGTAAAAGTCATAAAGCCATTGAGGTGTTGAAAGATATGGC GAAGAAAAATTGCGATCTGAATGAGATTTGTTATAGTGTAGTGATTGATGGATTATGCAAGGCCGGGAATATTAAGGAGGCGACAATTTTGTGGACACAG ATGTTGCAGAAAGGATGTAAGCCTGATGTTGTTGCTTACAGTTCGATGATTCATGGTCTTTGCTGCTTTGGCTCGGTAGAAGATGCTCTGAAATTGTACA ATGAAATGCTTTGTGAAGAACCCAAAGCTCAGCCAGATGTTGTCACTTACAACATACTCTTTAATGCTTTGTGCAACCAGAGTAGTATGTCTTCTGCCAT TGATCTCTTGAGCAGAATGTTGGACCGAGGGTGTGATCCCGACTTGGTTACATGCAACATATTCCTGAGAGCATTGCGAGAGAAGATCGATCCGCCTCAA GACGGAAGGGAGTTCTTGGATGAGCTTGTGGTTCGGTTATTTAAGCGAGAAAGAGCTTTGGGTGCTTCCAAAATTTTGGAAGTCATGCTACAGAAGGTTT TGCTACCAAAGGCATCTACTTGGGGAGTAGTTGTTCAGGAAATATGCAAACCCAAAAAAATTCAAGCAGCCATTGAAAGGTGCCGGAAAAACATTTCTGT AGAATAA
AA sequence Show only first row Show all	>Lus10038377 pacid=23158403 polypeptide=Lus10038377 locus=Lus10038377.g ID=Lus10038377.BGIv1.0 annot-version=v1.0 MPKCPLRATTTLLLNLLSPQSSAFHQSLLCKSSSAVSPHFNNFSSLPNTSLQRQLHKDDAKNEPELPIPDNIFQSPTRMGSYQLGDSTFYSLIDSYATSG DFDSLEKVLGRMKRENRVFMEKSFILVFKAYGKAGLPENALQLFDRMSDEFQCKRTVRSFNSVLNVVIQAGLYGRALEFYDHVVGSKHVNISPNVLTFNL IVKAMCKLGMVDKAIEVFREMPVRKCDPDVYTYCTLMDGLCKEDRIDEAVSLLDEMQVEGCFPNSPTFNVLINGLCKKGDLVRAGKIVDNMFFKGCVPNE VTYNTLIHGLCLRGKLDKAVSLLDRMVSYKCVPNGVTYGTIINGLVKQSRALDAVQVLASLEERGYSVNEYVYSALISGLFKEGKAEEAMKLFNGMVEKG CNFNTVVYSVVIDGLCKDAKPEEGLEILLEMENKGCVPNAYTYSSLMKGFFETGKSHKAIEVLKDMAKKNCDLNEICYSVVIDGLCKAGNIKEATILWTQ MLQKGCKPDVVAYSSMIHGLCCFGSVEDALKLYNEMLCEEPKAQPDVVTYNILFNALCNQSSMSSAIDLLSRMLDRGCDPDLVTCNIFLRALREKIDPPQ DGREFLDELVVRLFKRERALGASKILEVMLQKVLLPKASTWGVVVQEICKPKKIQAAIERCRKNISVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	0	1
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	1.4	0.8080
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	1.4	0.8300
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	2.4	0.7857
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	3.7	0.7641
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	5.7	0.7851
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	9.5	0.7789
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	12.2	0.7675
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000098 [exp]	12.2	0.6590
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	12.7	0.6909
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	14.4	0.7587

Compare expression of checked genes

Lus10038377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.