Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20300 125 / 2e-34 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G55340 91 / 2e-22 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 77 / 1e-17 Protein of unknown function (DUF1639) (.1) AT3G60410 61 / 9e-11 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G25370 59 / 1e-10 Protein of unknown function (DUF1639) (.1) AT4G17440 47 / 3e-06 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G68340 45 / 1e-05 Protein of unknown function (DUF1639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036240 [exp] 199 / 2e-62 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 86 / 4e-21 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010312 [exp] 83 / 1e-19 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013616 [exp] 57 / 5e-11 AT1G55340 111 / 1e-32 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10004378 [exp] 55 / 8e-09 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013412 [exp] 53 / 8e-09 AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 49 / 1e-06 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10035144 [exp] 43 / 6e-05 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1) Lus10040176 [exp] 41 / 0.0003 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073400 [exp] 137 / 1e-38 AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G157500 [exp] 136 / 2e-38 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G004000 [exp] 92 / 7e-23 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 89 / 1e-21 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 89 / 2e-21 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 87 / 7e-21 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 77 / 1e-16 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 74 / 1e-15 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.014G044800 [exp] 54 / 1e-08 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.010G122700 [exp] 54 / 1e-08 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10038379 pacid=23158198 polypeptide=Lus10038379 locus=Lus10038379.g ID=Lus10038379.BGIv1.0 annot-version=v1.0 ATGGTGGTTGTGGCGATGACCAGGAATTTGGAAAAGCGATCTGCTGGGAATGGGTCCCCATCACGTACTCCTGCCGGTGGTAGCGGTGGAGGAGGGAACG GGAGCCGTGTGGTTTCTAGATCTACTGCGGGGAAGCGATCTTCCCCTCCGACTCCTGATAAAGTTGATAAGAAGCAGCAACAGCAGCAGCAAACCACCTC TCGTTCTGTTAGGGACGACAAATCCAATGGATCGGTAGCTGCCTCCCTAGTGCATCATCACCAAACTGCTGCTGATCATCATCATCACCACGTTGAGTCA ACATCTTGGCAATCAGAGGTTGCTGCTAATAATAATAATAATAATACTGCAGCAGCAGCACCAGTGGAGAGAGTGGAGTGGCCAAGGATCTTCCTCTCCT TGTCGAGGAAGGAGAAAGAGGATGATTTCCTGGCTATGAAAGGCACCAAGCTTCCTCAACGGCCCAAGAAGAGGGCTAAGAACGTTGATAGAGGCCTTCA GTACTGCTTTCCAGGGATGTGGCTGTCTGATTTGACAAAGAGTAGGTATGAAGTAAGAGAGAAGAAGAGTGTGAAGAAGCAGCAGCAGAAGAGGAGAGGA TTGAAGGGGATGGAGAGCATGGACAACAACAGTGAATCTGAGTGA
AA sequence Show only first row Show all	>Lus10038379 pacid=23158198 polypeptide=Lus10038379 locus=Lus10038379.g ID=Lus10038379.BGIv1.0 annot-version=v1.0 MVVVAMTRNLEKRSAGNGSPSRTPAGGSGGGGNGSRVVSRSTAGKRSSPPTPDKVDKKQQQQQQTTSRSVRDDKSNGSVAASLVHHHQTAADHHHHHVES TSWQSEVAANNNNNNTAAAAPVERVEWPRIFLSLSRKEKEDDFLAMKGTKLPQRPKKRAKNVDRGLQYCFPGMWLSDLTKSRYEVREKKSVKKQQQKRRG LKGMESMDNNSESE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20300			Protein of unknown function (D...		Lus10038379 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	2.0	0.9015
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	2.2	0.9103
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	5.7	0.8655
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	7.7	0.8801
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	8.1	0.8920
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	9.5	0.8995
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	10.2	0.8784
					Lus10039025 [exp]	10.8	0.8933
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	14.4	0.8507
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	14.5	0.8591

Compare expression of checked genes

Lus10038379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.