Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20280 147 / 4e-44 TAF11 TBP-associated factor 11 (.1) AT1G20000 117 / 1e-32 TAF11b TBP-associated factor 11B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036241 [exp] 217 / 6e-71 AT4G20280 188 / 1e-59 TBP-associated factor 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073500 [exp] 173 / 2e-54 AT4G20280 219 / 2e-72 TBP-associated factor 11 (.1) Potri.003G157450 [exp] 86 / 4e-22 AT4G20280 87 / 4e-23 TBP-associated factor 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF04719 [flax] [poplar] TAFII28 hTAFII28-like protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10038380 pacid=23158453 polypeptide=Lus10038380 locus=Lus10038380.g ID=Lus10038380.BGIv1.0 annot-version=v1.0 ATGAATCAGCTGAAGGATCCCTTCGAGGCGGCCTACGAAGAGCAGGAGGATTCTCCTCCCGATTCGCCACTTGCCGCCGATGATTTGGATGCCGGACCAT CTTCTCCTCACCCTCCTCCTGCAGCTCATGGTTCTCAGGGCGCCGTAACCGTCGAAGGGGACGATGAGACTGCCAACAGTAATCTCCGTCTCTCCGATCC TTCTTCTTCGGCTCCACCCTCGTCAACTGCTAGAAATAAAGGCAAGATGAAAGAGGAAGACGAGGATGAAGAGGAAGACAACATGGAAGTTGAGCTGGCT AAGCTCCGTTCCACTGCGGACCCTGATAAGATGGCCAAGATGCATGAACATGGTTTCTATGTGGTTCTCAAGTGTTGGTTAGATAGACTTTCAGGAGTCT TAATCAGTTATCATCAAGCTATTGCTGATTTGCTGGTAAGCATTACAGGGACACAAAAGATTTCGCTGCAAGTGAATATTGTTGTTTGTGGGATAGCGAA AATGTTTGTCGGTGAAGTTGTTGAAACAGCTAGAATTGTCATGGCAGAAAGAAGAGAATCTGGACCAATCAGGCCTTGTCATCTCAGGGAAGCTTATAGA CGACTGAAGCTCGAGGGTAAAATACCAAAAAGATCAGTGCCAAGGCTTTTCCGTTAG
AA sequence Show only first row Show all	>Lus10038380 pacid=23158453 polypeptide=Lus10038380 locus=Lus10038380.g ID=Lus10038380.BGIv1.0 annot-version=v1.0 MNQLKDPFEAAYEEQEDSPPDSPLAADDLDAGPSSPHPPPAAHGSQGAVTVEGDDETANSNLRLSDPSSSAPPSSTARNKGKMKEEDEDEEEDNMEVELA KLRSTADPDKMAKMHEHGFYVVLKCWLDRLSGVLISYHQAIADLLVSITGTQKISLQVNIVVCGIAKMFVGEVVETARIVMAERRESGPIRPCHLREAYR RLKLEGKIPKRSVPRLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	1.0	0.7668
					Lus10040651 [exp]	2.4	0.7183
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	13.2	0.6850
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	17.2	0.6487
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	18.0	0.6479
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	24.7	0.6180
AT1G48745			unknown protein		Lus10013499 [exp]	28.6	0.6054
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	34.7	0.6898
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10015361 [exp]	41.0	0.6122
					Lus10019266 [exp]	43.8	0.6238

Compare expression of checked genes

Lus10038380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.