Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20270 390 / 2e-126 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 347 / 1e-109 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 342 / 8e-108 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 285 / 6e-87 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 233 / 1e-67 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT2G25790 227 / 1e-65 Leucine-rich receptor-like protein kinase family protein (.1) AT5G51350 223 / 1e-64 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 220 / 5e-63 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 212 / 4e-60 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 184 / 2e-50 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036242 [exp] 692 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 343 / 3e-108 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 335 / 1e-105 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 333 / 2e-104 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 325 / 2e-101 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 292 / 6e-90 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 276 / 3e-83 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 275 / 5e-83 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10040592 [exp] 233 / 1e-69 AT1G75820 642 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073600 [exp] 482 / 1e-161 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 476 / 3e-159 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 334 / 8e-105 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G223900 [exp] 304 / 9e-94 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G019900 [exp] 282 / 9e-86 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G241500 [exp] 281 / 2e-85 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 242 / 8e-71 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 238 / 1e-69 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 233 / 1e-67 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 231 / 7e-67 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038381 pacid=23158300 polypeptide=Lus10038381 locus=Lus10038381.g ID=Lus10038381.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTTGTCACCTGACTCTGCCTTTCATTCCGATTTTCATTCTCCTTCTTCTTCACAACAACAATGGCTGCCATTCACTTTCCTCTCACGGAC TCTACCTGAAAAGACAGGCTTCACTCCTAGTCACGATCAAGCAATCTTTCACATCCCACAATCCTTCCCTTGTTTCCTGGAGCCTCTCAAATTTCTCCTC CCTCTGTTCCGGAACCTGGGCGGGAATCCAATGCGACAACGAATCGAATCGGTCGGTGGTCTCTGTAGACATCTCGAATTCCAACGTTTCCTCCGGAATC CTCTCCCCTGCATTCGCCCAACTACAAACTTTATCAACGCTCTCACTCGCCGGAAACAGCTTCTCCGGCTTGTTCCCAGCGGCAGAGTTCTTTCACAAGC TCCCCATGCTGAAGTTCCTCAACATCTCTGGAAACCTCTTCTCCGGTGAAATCAGCAAATGGGATTTCTCAAAGATGCAATCTTTGTCGGTGTTGGATGT CTACGACAACAATTTCAACGGCTCACTCCCCACCGCCGGAATCACTCTGCTTCCGAGTTTAACCCACTTGGATTTCGGCGGGAATTACTTCACCGGGGAA ATCCCTCCCAGCTATGGAGATATTCGTCAGCTGGTTTACCTCTCTCTTAAAGGGAACGATCTCCGCGGGGAAATCCCGACGGAGATCGGAAACCTAACCA ATCTCCGGCAGCTTTATCTAGGGTATTTCAATCAATTCAGCGGCGGAATCCCGCCGGAGATCGGAAATCTGATCAGCTTGGTCCATCTTGACCTCGCCAA TTGCAAATTACAAGGCTCAATTCCTCCGGAATTGGGGAAATTGGCGGAATTGGACACTCTATTCTTACAAACCAACGAGCTAACCGGTTTGATTCCTCCC CAATTGGGGAATCTCAGCAACCTCAAAACCCTAGATCTCTCCAACAATGTCCTGACAGGTGGGATTCCGGTCGAGTTTGCGGGTCTCCGCGAACTCACCC TTTTGAATCTTTTCATCAACAGGTTACACGGCGAGATCCCGCCGTTCGTGGCAGACCTTCAGGAGCTGGAGGTCTTGAAGCTCTGGCATAACAACTTCAC CGGAGCGATCCCGGAGAAGCTCGGCGAAAACGGGAGGTTGATTGAGCTCGACCTATCGAGCAACAAGCTGACAGGAAGCATCCCGCAATCGCTGTGCTTG GGGAAGAAGCTCAAGGTTCTGATTCTGAAGATCAATTTCTTGTTCGGATCGATACCTGACGATCTCGGAAACTGCGAAACTCTATTGGGGGGTCGGCTGC GATACTCTATTGAGGGTTCGGTTGGGTCAGAATTACCTGACAGGGAAAATTCCTGA
AA sequence Show only first row Show all	>Lus10038381 pacid=23158300 polypeptide=Lus10038381 locus=Lus10038381.g ID=Lus10038381.BGIv1.0 annot-version=v1.0 MAASCHLTLPFIPIFILLLLHNNNGCHSLSSHGLYLKRQASLLVTIKQSFTSHNPSLVSWSLSNFSSLCSGTWAGIQCDNESNRSVVSVDISNSNVSSGI LSPAFAQLQTLSTLSLAGNSFSGLFPAAEFFHKLPMLKFLNISGNLFSGEISKWDFSKMQSLSVLDVYDNNFNGSLPTAGITLLPSLTHLDFGGNYFTGE IPPSYGDIRQLVYLSLKGNDLRGEIPTEIGNLTNLRQLYLGYFNQFSGGIPPEIGNLISLVHLDLANCKLQGSIPPELGKLAELDTLFLQTNELTGLIPP QLGNLSNLKTLDLSNNVLTGGIPVEFAGLRELTLLNLFINRLHGEIPPFVADLQELEVLKLWHNNFTGAIPEKLGENGRLIELDLSSNKLTGSIPQSLCL GKKLKVLILKINFLFGSIPDDLGNCETLLGGRLRYSIEGSVGSELPDRENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	0	1
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	1.4	0.8941
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	2.2	0.8965
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	6.2	0.8562
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009244 [exp]	7.5	0.8924
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	8.8	0.8685
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	8.9	0.8821
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	9.5	0.8594
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	11.7	0.8687
AT2G42600		ATPPC2	phosphoenolpyruvate carboxylas...		Lus10029837 [exp]	12.9	0.7796
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	13.0	0.8565

Compare expression of checked genes

Lus10038381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.