Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20270 713 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 628 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 620 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 521 / 2e-175 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 379 / 2e-119 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 369 / 7e-117 HSL1 HAESA-like 1 (.1) AT1G34110 369 / 5e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 363 / 6e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 363 / 2e-113 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 361 / 2e-113 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036242 [exp] 987 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011576 [exp] 623 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 618 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 607 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 602 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 601 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10017267 [exp] 518 / 3e-174 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 518 / 4e-174 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 384 / 1e-121 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073600 [exp] 793 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 782 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 640 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G009200 [exp] 628 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 538 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 525 / 6e-177 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 394 / 1e-125 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 390 / 3e-124 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G049100 [exp] 379 / 2e-120 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G139700 [exp] 375 / 2e-118 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038382 pacid=23158443 polypeptide=Lus10038382 locus=Lus10038382.g ID=Lus10038382.BGIv1.0 annot-version=v1.0 ATGTCACTTCTGGAGCTGCAGAGTAATTACTTAACCGGTCCGGTTTCGGAGCTGAGGATGAACAGAGTGGGTGGTGGTTCGAAACTGGAGCAGCTGAATC TTTCCGAGAATCGGTTAACCAGTTCGATGCCTGGTTCGATTGGGAACCTGTCTAGCTTGCAGATTCTGCTTCTGAACGGAAACCAATTCACAGGTGGAAT TCCTTCTCAAATTGGTGAATTGAAGAGTGTGCTGACGTTGGATATGAGCAGGAACAATTTCTCTGGGAGTATACCTCCAAGCATTGGGAGTTTGTTGATG TTAACCTACTTGGATTTGAGCCATAACCAGCTATTCGGTCCAATTCCGACTCAGGTGGCTCAGATTCATATCCTTGATTACTTCAATGTGTCATGGAACC ATTTGAACGGAAGCCTCCCGAGGGAAATCGGGTCGATGAAGAGCCTAACATCAGCGGATTTCTCCCATAATAACTTCTCAGGTTCGATCCCCGAATTCGG TCAGTACTCCTTCTTTAACTCGACGTCCTTTGTGGGCAATCCTCTTCTTGTGGGTTCTGTTCTGAATAACCAATCCGGTTCCCCACTCGAGTTCCGTACC CACAATGGTTCGACCGATTCGAAAGTCTCTGGAAAATTCAAACTCTTTTTTGCTCTAGGACTACTATTATGTTCGCTCGTTTTCGTCGTCTTGGCAGTCG TCAAGACACGGAAATGGCGAAAGGGTTCCAGCAAATGGAGGCTGACCGCGTTCCAGAAGCTCGAATTCACTTGCCAGGACGTCCTGGAATGCGTCAAGGA CAACAATGTGATAGGCAGGGGAGGGGCTGGCACGGTTTACAAAGGAACAATGCCCGACGGAGAAAATGTAGCAGTGAAAAAGTTGCTCGGAATAAGCAAA GGCTCTTCTTCCCACCACGACAACGGCCTTGCAGCCGAGATACAAACGCTAGGCAGGATCCGGCACAGGAACATCGTAAGATTGTTGGCGTTCTGCTCGA ACAAAGACACCAACTTGCTGGTTTACGAGTACATGCCGAACGGGAGCCTTGGCGAAGTTCTCCACGGGAAAAGAGGAGGGTTTCTGAAGTGGGGAACTAG GCTCAAAATAGCGATCGAAGCCGCTAAAGGGTTGTGTTACTTGCACCACGATTGTTCGCCTCTCATAGTTCATAGAGATGTCAAGTCGAACAACATACTG CTGAACTCGGAGTTCGAGGCTCATGTTGCCGACTTTGGACTGGCCAAGTTCCTGCAGGATTCCGGGAATTCGGAGTGCATGTCAGCAATTGCAGGCTCCT ACGGCTACATTGCGCCAGAGTATGCATACACGTTGAAAGTGGACGAGAAGAGCGACGTGTACAGTTTCGGGGTGGTCTTGCTAGAGCTTATAACAGGGAG GAAACCGGTGGGGAATTTCGAGGAAGAAGGTCTGGATATCGTGCAGTGGAGTAGGATCCACACGAATTTCGTCAAGGAAAAAGTTGTGAAGATTTTGGAC CAGCGGCTAACGGATGAGATACCTTTGAGTGAAGCGACGCAAGTGTTTTTTGTGGCGATGTTGTGCGTGCAGGAACATAGTGTGGAGAGGCCAACCATGA GAGAAGTTGTTCAAATACTTGCCCAAGCCAAACAACCCCTTACTTTCCAGATTCAGTAG
AA sequence Show only first row Show all	>Lus10038382 pacid=23158443 polypeptide=Lus10038382 locus=Lus10038382.g ID=Lus10038382.BGIv1.0 annot-version=v1.0 MSLLELQSNYLTGPVSELRMNRVGGGSKLEQLNLSENRLTSSMPGSIGNLSSLQILLLNGNQFTGGIPSQIGELKSVLTLDMSRNNFSGSIPPSIGSLLM LTYLDLSHNQLFGPIPTQVAQIHILDYFNVSWNHLNGSLPREIGSMKSLTSADFSHNNFSGSIPEFGQYSFFNSTSFVGNPLLVGSVLNNQSGSPLEFRT HNGSTDSKVSGKFKLFFALGLLLCSLVFVVLAVVKTRKWRKGSSKWRLTAFQKLEFTCQDVLECVKDNNVIGRGGAGTVYKGTMPDGENVAVKKLLGISK GSSSHHDNGLAAEIQTLGRIRHRNIVRLLAFCSNKDTNLLVYEYMPNGSLGEVLHGKRGGFLKWGTRLKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNIL LNSEFEAHVADFGLAKFLQDSGNSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFEEEGLDIVQWSRIHTNFVKEKVVKILD QRLTDEIPLSEATQVFFVAMLCVQEHSVERPTMREVVQILAQAKQPLTFQIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	0	1
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	1.0	0.9359
AT1G62870			unknown protein		Lus10004325 [exp]	2.0	0.9163
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	3.2	0.8823
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	3.5	0.9085
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	3.7	0.8924
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	4.0	0.9015
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	4.2	0.8934
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	6.9	0.8719
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	7.1	0.8981
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	9.0	0.8882

Compare expression of checked genes

Lus10038382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.