Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44635 1227 / 0 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G16440 369 / 7e-115 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 356 / 3e-111 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT1G44900 320 / 1e-95 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 315 / 3e-95 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G07690 311 / 2e-94 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 293 / 4e-87 MCM8 minichromosome maintenance 8 (.1) AT2G14050 248 / 7e-72 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036244 [exp] 1600 / 0 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 367 / 5e-114 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 355 / 7e-110 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001452 [exp] 344 / 9e-107 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 342 / 7e-106 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10015267 [exp] 317 / 1e-92 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 313 / 6e-91 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10025389 [exp] 300 / 2e-89 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10023169 [exp] 300 / 4e-89 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074000 [exp] 1357 / 0 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.009G121500 [exp] 374 / 7e-117 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 347 / 6e-108 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 318 / 9e-97 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 318 / 9e-97 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 317 / 2e-96 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 311 / 3e-92 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 298 / 1e-88 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 251 / 1e-72 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 0 / 1 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10038384 pacid=23158301 polypeptide=Lus10038384 locus=Lus10038384.g ID=Lus10038384.BGIv1.0 annot-version=v1.0 ATGGACGCCTTTGGAGGTTACTTCATGGACGAGAAGGCTGTTCAAGTCGAGAACATCTTCCTCGAGTTCCTCAAGAGCTTCAGACCGGACAATAACAACG GCGGCGGGCCCTACTACGCGGCTGAGATCGAGGCGATGAAGGCCAACGAATCCACTACCATGTTCATTGATTTCTCTGACGTCATGCGTTACAATGATTT GCTGCAGAAAGCCATAGCTGACGAGTATTTGAGGTTTGAGTCTTACTTGAAAAATGCTTGCAAGAGATTTGTTACGGAGCTGAGTCCCTCTGTAATCTCT GACGATAACCCTAACACGGACATCAATGTTGCTTTCTTCAACATACCTTTCTCTAAGCGGCTAAGGGAGCTAACAACTGCTGAAATTGGCAAGCTGGTAT CAGTGACTGGGGTGGTGACTCGAACTAGCGAGGTGCGACCAGAGCTGCTCTATGGCACTTTCAAGTGCTTGGAGTGTGCTTCAGTTATCAAGAATGTCGA GCAGCAATTCAAATATACTGAGCCAGTAATTTGCGTGAATGCAACTTGCAACAACAAAATGAGATGGGCATTGCTTAGAACTGAGAGCAAATTCGCAGAT TGGCAGAGGGTAAGAGTGCAAGAAACTTCGGCAGAGATCCCCCCTGGCTCACTTCCCAGGTCACTGGATGTTGTACTTCGCCATGATATTGTTGAACAGG CCAGAGCTGGTGATACGGTTATTTTCACTGGCACTGTGGTAGTAATACCGGATATATCTGCATTGGCTTCCCCCGGGGAGAGAGCCGAATGCAGTAGGGA TGCTCCACAACGCAAGAATTCTGGCCTTGGAAATGATGGCATGAAGGGATTGAGAGCACTGGGAGTTAGAGACTTATCATATCGTCTTGCCTTTATTGCC AATTCGGTTCAGGTTTGTGATGGTAGAAGGGAGGTTGACATCAGGAATAGAAAGAAAGATGCTGACGAAGATGAAAGTCAGCAGTTCACGTCAGAAGAGC TGGATGAGATTCAAAGAATGCGGAACACCCCTGATTTTTTCAATAAGCTAGTTGATAGCGTTGCTCCAACTGTTTTTGGTCATCAAGATATCAAGAGAGC AATTCTCCTAATGCTTCTAGGCGGTGTTCACAAATTCACACACGAGGGCATCAATCTTAGAGGAGACATTAATGTCTGTATTGTTGGAGATCCCAGTTGT GCAAAGTCGCAGTTCCTCAAATATACTGCCGGTATAGTTCCGAGATCTGTTTATACATCTGGAAAGTCCTCTTCTGCTGCTGGCCTGACGGCAACTGTTG CTAAAGAGCCAGAAACTGGTGAATTTTGTATTGAGGCTGGTGCACTGATGCTTGCTGATAATGGTATTTGCTGCATCGACGAATTTGACAAGATGGACGT CAGAGATCAGGTTGCCATTCATGAAGCGATGGAGCAACAGACGATAAGCATCACAAAAGCCGGAATACAAGCTACACTTAATGCTAGAACTTCAATTTTA GCTGCTGCTAATCCCACTGGTGGCCGATATGACAAGTCTAAGCCACTGAAGTACAATGTAGCCCTTCCACCTGCAATTCTCTCAAGATTTGATCTGGTTT ATGTAATGATTGATGATCCGGACGACCAAACTGACTATCACATTGCCCACCACATTGTGAGAGTTCATCAAATGCGTGAAGAGGCCCTTGCTCCAACATT CACTACTGCTGAATTGAAGCGTTACATTGGCTATGCAAAAACATTGAAACCAAAGTTAAATGCAGAAGCGAGAAAACACCTGGTGGAATCTTATGTTACT CTCCGCAAAGGCGACACAACTCCCGGGTCAAGAGTTGCTTATCGCATGACAGTTAGACAGCTGGAAGCATTGATCAGACTGTCCGAGGCCATAGCTCGTA GTTATTTGGACTTACAGGGTAATCTTTTCTTCAGGTGCAACCTCGCCATGTTAAAGTTGCATGTGGAGTCGAGTGAGATTGATCTATCAGAGTTCCAAGA AGCGAGTCCTGAAGAAGGCGGCGATGGTGGTAATGATGAAAACACTGGCACTGGACCAGATGATGCACAACCCAGCAACATGGAAAATGCAGGAGCAGGT CCAGCTAACCAACAAGCAAAGAAGCTTGTACTTACTGAAGAGTACTTCCAGAGGGTTTCACAAGCACTTGTTATGCGCCTGAGGGAGCACGAGGATGCTG TAGCCCGAGATGGGACAGGACTGGCTGGGATGAAGCAGGGAGACCTAATAAAATGGTACGTTGAACAGCAGAATGAGAAGAACAGCTACAGCTCAGTAGA GGAAGCTAAAGAAGAAGCATTCAAAGTGAAAGCCATCATAGAGAGTTTGATCAGAAGAGAAGGGTACTTGATAGTAATAGATGATGGGGTACAACCGGAA GCAGCAGATGGGGAAGAAGGCGGAAGACAGCCATCCAGAAACAACAGGATACTGGTTGTGGCTCCTAACTACGTTGTGGATTGA
AA sequence Show only first row Show all	>Lus10038384 pacid=23158301 polypeptide=Lus10038384 locus=Lus10038384.g ID=Lus10038384.BGIv1.0 annot-version=v1.0 MDAFGGYFMDEKAVQVENIFLEFLKSFRPDNNNGGGPYYAAEIEAMKANESTTMFIDFSDVMRYNDLLQKAIADEYLRFESYLKNACKRFVTELSPSVIS DDNPNTDINVAFFNIPFSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLYGTFKCLECASVIKNVEQQFKYTEPVICVNATCNNKMRWALLRTESKFAD WQRVRVQETSAEIPPGSLPRSLDVVLRHDIVEQARAGDTVIFTGTVVVIPDISALASPGERAECSRDAPQRKNSGLGNDGMKGLRALGVRDLSYRLAFIA NSVQVCDGRREVDIRNRKKDADEDESQQFTSEELDEIQRMRNTPDFFNKLVDSVAPTVFGHQDIKRAILLMLLGGVHKFTHEGINLRGDINVCIVGDPSC AKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSIL AAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQMREEALAPTFTTAELKRYIGYAKTLKPKLNAEARKHLVESYVT LRKGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLDLQGNLFFRCNLAMLKLHVESSEIDLSEFQEASPEEGGDGGNDENTGTGPDDAQPSNMENAGAG PANQQAKKLVLTEEYFQRVSQALVMRLREHEDAVARDGTGLAGMKQGDLIKWYVEQQNEKNSYSSVEEAKEEAFKVKAIIESLIRREGYLIVIDDGVQPE AADGEEGGRQPSRNNRILVVAPNYVVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	0	1
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	1.0	0.9837
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	3.0	0.9738
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	3.2	0.9748
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	3.2	0.9654
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10009771 [exp]	3.5	0.9537
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	3.5	0.9636
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10000708 [exp]	5.1	0.9472
AT4G21820			binding;calmodulin binding (.1...		Lus10007665 [exp]	5.7	0.9579
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	6.0	0.9698
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	6.9	0.9634

Compare expression of checked genes

Lus10038384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.