Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44650 162 / 2e-49 Y3IP1, AtCEST Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036245 [exp] 367 / 5e-131 AT5G44650 169 / 4e-52 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10024729 [exp] 196 / 9e-62 AT5G44650 217 / 3e-69 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10008075 [exp] 171 / 4e-50 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074200 [exp] 197 / 7e-63 AT5G44650 266 / 3e-89 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038385 pacid=23158372 polypeptide=Lus10038385 locus=Lus10038385.g ID=Lus10038385.BGIv1.0 annot-version=v1.0 ATGGCAACGACTCTATCCTTTCATCTCTCCAAATTCCCAACTTCTTCCTCAGCACCGGTTCCGTCGCCTTACCGGAAACCCCATTTCGTATTCTTACCGG TAAGAGGATTGGGAATCAGTTGCACGAATTGCGCCACCCGAAGTCGGAGGAACGCCGCCGGGCTGTTGTTGGTCGGTAGAGAGGATGCTGAGCTGCAGGT TGAAGAAGGGGAAGAAGAATTGCCGCCGTCACCTCAGGACCTCGAAAACATTCAAGAAATCAAAAGGGTGTTGCAGCTGCTTAAAAAGAACAGAGATATG GATTTCTATGAGGTTAAGTTGACGATATCGATTGAGGACCCAAGGGAAGTGGAGAGGAGGAAGCTTTTCGGCATTGAAGATCCTGATGCTCCTACCAGAG AAGACCTTGCTGATGCTTTGGAATCAGTCAAGGAGGGCAAGATTCCCGAAAATCGCTCTGCACTTCAAATGCTAGCTGATGAGATGACGAACTGGCCTAA TTTAGAGATTACCTTGTTGACAATTCGGTTCCATCATGAATCTTGGCCAAAGGTGGAGGCTTTCAAGACGAAGAAGAAACCAACGAAATCCCTTTACGCA AGAATCACAGACACTGGTGTTGATCTTAAAGAGGCTGCCAAGAGACTAAAATCCGACTGGGATTCAGACCGAGACTAA
AA sequence Show only first row Show all	>Lus10038385 pacid=23158372 polypeptide=Lus10038385 locus=Lus10038385.g ID=Lus10038385.BGIv1.0 annot-version=v1.0 MATTLSFHLSKFPTSSSAPVPSPYRKPHFVFLPVRGLGISCTNCATRSRRNAAGLLLVGREDAELQVEEGEEELPPSPQDLENIQEIKRVLQLLKKNRDM DFYEVKLTISIEDPREVERRKLFGIEDPDAPTREDLADALESVKEGKIPENRSALQMLADEMTNWPNLEITLLTIRFHHESWPKVEAFKTKKKPTKSLYA RITDTGVDLKEAAKRLKSDWDSDRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	0	1
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	1.0	0.9561
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	1.4	0.9363
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	2.4	0.9152
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	2.8	0.9121
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	4.2	0.8866
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	4.2	0.9016
AT2G38780			unknown protein		Lus10019776 [exp]	4.5	0.9056
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	4.6	0.8973
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	6.3	0.8833
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	8.1	0.8816

Compare expression of checked genes

Lus10038385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.